CircRNA Information

General Information
circRNA Basic Information
CircID chr14:24306021|24306135
Strand -
CircType exon
Host Gene ENSG00000196943.11;
Algorism CIRI2;
Sequence ATTCAGGCTGCCAAAGAGGTCTCGAGGGTTTTGCTTGTACACGTCAAAGGTGAATCGGGCGATGTCCTTGCTGTGCTTGGGCCTCTCCCGTCCCAGGCCATATGACAGCACTCCA
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr14:24306021|24306135 hsa-miR-96-5p 0 0 1
chr14:24306021|24306135 hsa-miR-96-3p 0 0 1
chr14:24306021|24306135 hsa-miR-182-5p 0 0 1
chr14:24306021|24306135 hsa-miR-182-3p 0 0 1
chr14:24306021|24306135 hsa-miR-122-5p 0 0 1
chr14:24306021|24306135 hsa-miR-122-3p 0 0 1
chr14:24306021|24306135 hsa-miR-626 0 0 1
chr14:24306021|24306135 hsa-miR-661 1 0 1
chr14:24306021|24306135 hsa-miR-1271-5p 0 0 1
chr14:24306021|24306135 hsa-miR-1271-3p 0 0 1
chr14:24306021|24306135 hsa-miR-548p 0 0 1
chr14:24306021|24306135 hsa-miR-769-5p 1 0 1
chr14:24306021|24306135 hsa-miR-512-3p 0 0 1
chr14:24306021|24306135 hsa-miR-885-3p 0 0 1
chr14:24306021|24306135 hsa-miR-9 0 0 1
chr14:24306021|24306135 hsa-miR-762 1 0 0
chr14:24306021|24306135 hsa-miR-3196 1 0 0
chr14:24306021|24306135 hsa-miR-5787 1 0 0
chr14:24306021|24306135 hsa-miR-6089 1 0 0
chr14:24306021|24306135 hsa-miR-6757-5p 1 0 0
chr14:24306021|24306135 hsa-miR-92b-5p 1 0 0
chr14:24306021|24306135 hsa-miR-1233-5p 1 0 0
chr14:24306021|24306135 hsa-miR-6816-5p 1 0 0
chr14:24306021|24306135 hsa-miR-7107-5p 1 0 0
chr14:24306021|24306135 hsa-miR-3620-5p 1 0 0
chr14:24306021|24306135 hsa-miR-4728-5p 1 0 0
chr14:24306021|24306135 hsa-miR-1237-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr14:24306021|24306135
ORF Type ORF1
Protein Length 36
Nucleotide Length 108
Protein Sequence MPKRSRGFCLYTSKVNRAMSLLCLGLSRPRPYDSTP
Nucleotide Sequence CTGCCAAAGAGGTCTCGAGGGTTTTGCTTGTACACGTCAAAGGTGAATCGGGCGATGTCCTTGCTGTGCTTGGGCCTCTCCCGTCCCAGGCCATATGACAGCACTCCA
CircID chr14:24306021|24306135
ORF Type ORF2
Protein Length 36
Nucleotide Length 108
Protein Sequence MSYGLGRERPKHSKDIARFTFDVYKQNPRDLFGSLN
Nucleotide Sequence CTGTCATATGGCCTGGGACGGGAGAGGCCCAAGCACAGCAAGGACATCGCCCGATTCACCTTTGACGTGTACAAGCAAAACCCTCGAGACCTCTTTGGCAGCCTGAAT
CircID chr14:24306021|24306135
ORF Type ORF3
Protein Length 32
Nucleotide Length 99
Protein Sequence MAWDGRGPSTARTSPDSPLTCTSKTLETSLAA
Nucleotide Sequence ATGGCCTGGGACGGGAGAGGCCCAAGCACAGCAAGGACATCGCCCGATTCACCTTTGACGTGTACAAGCAAAACCCTCGAGACCTCTTTGGCAGCCTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab