CircRNA Information

General Information
circRNA Basic Information
CircID chr14:26479977|26480143
Strand -
CircType exon
Host Gene ENSG00000139910.19;
Algorism find_circ;CIRI2;DCC;
Sequence GTACTACTGAGCGAGTGTGCTTGATCCAGGGAACGGTTGAAGCACTGAATGCAGTTCATGGATTCATTGCAGAAAAAATTCGAGAAATGCCCCAAAATGTGGCCAAGACAGAACCAGTCAGCATTCTACAACCCCAGACCACCGTTAATCCAGATCGCATCAAACAA
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr14:26479977|26480143 hsa-miR-539-5p 0 0 1
chr14:26479977|26480143 hsa-miR-539-3p 0 0 1
chr14:26479977|26480143 hsa-miR-636 0 0 1
chr14:26479977|26480143 hsa-miR-640 0 1 1
chr14:26479977|26480143 hsa-miR-648 0 0 1
chr14:26479977|26480143 hsa-miR-298 0 0 1
chr14:26479977|26480143 hsa-miR-1179 0 0 1
chr14:26479977|26480143 hsa-miR-663b 0 0 1
chr14:26479977|26480143 hsa-miR-1206 0 0 1
chr14:26479977|26480143 hsa-miR-1246 0 0 1
chr14:26479977|26480143 hsa-miR-1292-5p 0 0 1
chr14:26479977|26480143 hsa-miR-1292-3p 0 0 1
chr14:26479977|26480143 hsa-miR-127-5p 0 0 1
chr14:26479977|26480143 hsa-miR-218-5p 0 1 1
chr14:26479977|26480143 hsa-miR-1283 0 0 1
chr14:26479977|26480143 hsa-miR-574-5p 0 0 1
chr14:26479977|26480143 hsa-miR-490-5p 0 0 1
chr14:26479977|26480143 hsa-miR-664 0 0 1
chr14:26479977|26480143 hsa-miR-218 0 0 1
chr14:26479977|26480143 hsa-miR-365 0 0 1
chr14:26479977|26480143 hsa-miR-548s 0 1 0
chr14:26479977|26480143 hsa-miR-4658 1 0 0
chr14:26479977|26480143 hsa-miR-4698 0 1 0
chr14:26479977|26480143 hsa-miR-5708 1 1 0
chr14:26479977|26480143 hsa-miR-3677-5p 1 0 0
chr14:26479977|26480143 hsa-miR-3189-5p 1 0 0
chr14:26479977|26480143 hsa-miR-7108-5p 0 1 0
chr14:26479977|26480143 hsa-miR-4640-5p 1 0 0
chr14:26479977|26480143 hsa-miR-5699-5p 0 1 0
chr14:26479977|26480143 hsa-miR-6752-5p 1 0 0
chr14:26479977|26480143 hsa-miR-4685-5p 1 0 0
chr14:26479977|26480143 hsa-miR-6729-5p 1 0 0
chr14:26479977|26480143 hsa-miR-6750-5p 0 1 0
chr14:26479977|26480143 hsa-miR-6822-5p 0 1 0
chr14:26479977|26480143 hsa-miR-7157-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr14:26479977|26480143
ORF Type ORF1
Protein Length 39
Nucleotide Length 117
Protein Sequence MQFMDSLQKKFEKCPKMWPRQNQSAFYNPRPPLIQIASN
Nucleotide Sequence ATGCAGTTCATGGATTCATTGCAGAAAAAATTCGAGAAATGCCCCAAAATGTGGCCAAGACAGAACCAGTCAGCATTCTACAACCCCAGACCACCGTTAATCCAGATCGCATCAAAC
CircID chr14:26479977|26480143
ORF Type ORF2
Protein Length 35
Nucleotide Length 105
Protein Sequence MRSGLTVVWGCRMLTGSVLATFWGISRIFSAMNP*
Nucleotide Sequence ATGCGATCTGGATTAACGGTGGTCTGGGGTTGTAGAATGCTGACTGGTTCTGTCTTGGCCACATTTTGGGGCATTTCTCGAATTTTTTCTGCAATGAATCCATGA
CircID chr14:26479977|26480143
ORF Type ORF1
Protein Length 31
Nucleotide Length 93
Protein Sequence MGHFSNFFCNESMNCIQCFNRSLDQAHSLSS
Nucleotide Sequence TTGGGGCATTTCTCGAATTTTTTCTGCAATGAATCCATGAACTGCATTCAGTGCTTCAACCGTTCCCTGGATCAAGCACACTCGCTCAGTAGT
CircID chr14:26479977|26480143
ORF Type ORF2
Protein Length 35
Nucleotide Length 108
Protein Sequence MMRSGLTVVWGCRMLTGSVLATFWGISRIFSAMNP
Nucleotide Sequence TTGATGCGATCTGGATTAACGGTGGTCTGGGGTTGTAGAATGCTGACTGGTTCTGTCTTGGCCACATTTTGGGGCATTTCTCGAATTTTTTCTGCAATGAATCCATGA
CircID chr14:26479977|26480143
ORF Type ORF3
Protein Length 39
Nucleotide Length 117
Protein Sequence MQFMDSLQKKFEKCPKMWPRQNQSAFYNPRPPLIQIASN
Nucleotide Sequence ATGCAGTTCATGGATTCATTGCAGAAAAAATTCGAGAAATGCCCCAAAATGTGGCCAAGACAGAACCAGTCAGCATTCTACAACCCCAGACCACCGTTAATCCAGATCGCATCAAAC
CircID chr14:26479977|26480143
ORF Type ORF4
Protein Length 49
Nucleotide Length 147
Protein Sequence MIQGTVEALNAVHGFIAEKIREMPQNVAKTEPVSILQPQTTVNPDRIKQ
Nucleotide Sequence TTGATCCAGGGAACGGTTGAAGCACTGAATGCAGTTCATGGATTCATTGCAGAAAAAATTCGAGAAATGCCCCAAAATGTGGCCAAGACAGAACCAGTCAGCATTCTACAACCCCAGACCACCGTTAATCCAGATCGCATCAAACAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
chr14:26479977|26480143 ELAVL1 0 2 0
chr14:26479977|26480143 ZNF184 0 0 1
chr14:26479977|26480143 FUS 0 2 0
chr14:26479977|26480143 NOP56 0 1 0
chr14:26479977|26480143 TAF15 0 1 0
chr14:26479977|26480143 IGF2BP2 4 4 2
chr14:26479977|26480143 AGO2 0 1 0
chr14:26479977|26480143 NOP58 1 1 0
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab