CircRNA Information

General Information
circRNA Basic Information
CircID chr14:34433301|34433554
Strand -
CircType exon
Host Gene ENSG00000165389.6;
Algorism CIRI2;
Sequence CTGGATACTCATTGAAACTAATGATTCTCAACTTCTCCTGCCTTCAACTCACCAGAGGAATATTAGACATCCACTTGTTAGTGGTTCTCTATGGGGGATAGTAGAGGAAAGCCAAATTTGGGCATTAATAGAACAAATCTTATGTTAAATCCTCGTATTATTTTTCTTGAGATAATATGACTACAGCTCAGATATAACCATATCCAATTTTTAACTACTTCAAACCAAGTAATTCCATATTATTCTCACTACTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr14:34433301|34433554 hsa-miR-155-5p 0 0 1
chr14:34433301|34433554 hsa-miR-155-3p 0 0 1
chr14:34433301|34433554 hsa-miR-375-5p 0 0 1
chr14:34433301|34433554 hsa-miR-375-3p 0 0 1
chr14:34433301|34433554 hsa-miR-496 0 0 1
chr14:34433301|34433554 hsa-miR-558 0 0 1
chr14:34433301|34433554 hsa-miR-571 0 0 1
chr14:34433301|34433554 hsa-miR-573 0 0 1
chr14:34433301|34433554 hsa-miR-580-5p 0 0 1
chr14:34433301|34433554 hsa-miR-580-3p 0 0 1
chr14:34433301|34433554 hsa-miR-584-5p 0 0 1
chr14:34433301|34433554 hsa-miR-584-3p 0 0 1
chr14:34433301|34433554 hsa-miR-589-5p 0 0 1
chr14:34433301|34433554 hsa-miR-589-3p 0 0 1
chr14:34433301|34433554 hsa-miR-656-5p 0 0 1
chr14:34433301|34433554 hsa-miR-656-3p 0 0 1
chr14:34433301|34433554 hsa-miR-890 0 0 1
chr14:34433301|34433554 hsa-miR-921 0 0 1
chr14:34433301|34433554 hsa-miR-940 0 0 1
chr14:34433301|34433554 hsa-miR-1238-5p 0 0 1
chr14:34433301|34433554 hsa-miR-1238-3p 0 0 1
chr14:34433301|34433554 hsa-miR-1261 0 0 1
chr14:34433301|34433554 hsa-miR-1279 0 0 1
chr14:34433301|34433554 hsa-miR-513c-5p 0 0 1
chr14:34433301|34433554 hsa-miR-513c-3p 0 0 1
chr14:34433301|34433554 hsa-miR-361-3p 0 0 1
chr14:34433301|34433554 hsa-miR-1244 0 1 1
chr14:34433301|34433554 hsa-miR-548c-3p 0 0 1
chr14:34433301|34433554 hsa-miR-369-3p 0 0 1
chr14:34433301|34433554 hsa-miR-1300 0 0 1
chr14:34433301|34433554 hsa-miR-219-1-3p 0 0 1
chr14:34433301|34433554 hsa-miR-365 0 0 1
chr14:34433301|34433554 hsa-miR-4299 0 1 0
chr14:34433301|34433554 hsa-miR-4303 0 1 0
chr14:34433301|34433554 hsa-miR-5703 0 1 0
chr14:34433301|34433554 hsa-miR-6083 0 1 0
chr14:34433301|34433554 hsa-miR-3925-5p 0 1 0
chr14:34433301|34433554 hsa-miR-3124-3p 0 1 0
chr14:34433301|34433554 hsa-miR-6769b-5p 1 1 0
chr14:34433301|34433554 hsa-miR-6893-5p 0 1 0
chr14:34433301|34433554 hsa-miR-6808-5p 0 1 0
chr14:34433301|34433554 hsa-miR-6879-5p 0 1 0
chr14:34433301|34433554 hsa-miR-4436b-3p 0 1 0
chr14:34433301|34433554 hsa-miR-3059-5p 0 1 0
chr14:34433301|34433554 hsa-miR-487b-5p 0 1 0
chr14:34433301|34433554 hsa-miR-487a-5p 0 1 0
chr14:34433301|34433554 hsa-miR-3129-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr14:34433301|34433554
ORF Type ORF1
Protein Length 29
Nucleotide Length 90
Protein Sequence MGDSRGKPNLGINRTNLMLNPRIIFLEII
Nucleotide Sequence ATGGGGGATAGTAGAGGAAAGCCAAATTTGGGCATTAATAGAACAAATCTTATGTTAAATCCTCGTATTATTTTTCTTGAGATAATATGA
CircID chr14:34433301|34433554
ORF Type ORF2
Protein Length 36
Nucleotide Length 111
Protein Sequence MPSTHQRNIRHPLVSGSLWGIVEESQIWALIEQILC
Nucleotide Sequence CTGCCTTCAACTCACCAGAGGAATATTAGACATCCACTTGTTAGTGGTTCTCTATGGGGGATAGTAGAGGAAAGCCAAATTTGGGCATTAATAGAACAAATCTTATGTTAA
CircID chr14:34433301|34433554
ORF Type ORF3
Protein Length 29
Nucleotide Length 90
Protein Sequence MKLMILNFSCLQLTRGILDIHLLVVLYGG
Nucleotide Sequence TTGAAACTAATGATTCTCAACTTCTCCTGCCTTCAACTCACCAGAGGAATATTAGACATCCACTTGTTAGTGGTTCTCTATGGGGGATAG
CircID chr14:34433301|34433554
ORF Type ORF4
Protein Length 37
Nucleotide Length 114
Protein Sequence MSCSHIISRKIIRGFNIRFVLLMPKFGFPLLSPIENH
Nucleotide Sequence CTGAGCTGTAGTCATATTATCTCAAGAAAAATAATACGAGGATTTAACATAAGATTTGTTCTATTAATGCCCAAATTTGGCTTTCCTCTACTATCCCCCATAGAGAACCACTAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab