CircRNA Information

General Information
circRNA Basic Information
CircID chr14:64541255|64541455
Strand -
CircType exon
Host Gene ENSG00000126803.9;
Algorism CIRI2;
Sequence CTGGGGGGCAAGGTGCACAGCGCGGTCATAACGGTCCCGGCCTATTTCAACGACTCGCAGCGCCAGGCCACCAAGGACGCAGGCACCATCACGGGGCTCAATGTGCTGCGCATCATCAACGAGCCCACGGCGGCGGCCATCGCCTACGGCCTGGACAAGAAGGGCTGCGCGGGCGGCGAGAAGAACGTGCTCATCTTTGAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr14:64541255|64541455 hsa-miR-198 0 0 1
chr14:64541255|64541455 hsa-miR-578 0 0 1
chr14:64541255|64541455 hsa-miR-942-5p 0 0 1
chr14:64541255|64541455 hsa-miR-942-3p 0 0 1
chr14:64541255|64541455 hsa-miR-1248 0 1 1
chr14:64541255|64541455 hsa-miR-1322 0 0 1
chr14:64541255|64541455 hsa-miR-1225-3p 1 1 1
chr14:64541255|64541455 hsa-miR-361-3p 0 0 1
chr14:64541255|64541455 hsa-miR-1233 0 0 1
chr14:64541255|64541455 hsa-miR-550 0 0 1
chr14:64541255|64541455 hsa-miR-129-3p 0 0 1
chr14:64541255|64541455 hsa-miR-203 0 0 1
chr14:64541255|64541455 hsa-miR-1295 0 0 1
chr14:64541255|64541455 hsa-miR-639 1 0 0
chr14:64541255|64541455 hsa-miR-661 1 0 0
chr14:64541255|64541455 hsa-miR-1183 1 0 0
chr14:64541255|64541455 hsa-miR-663b 1 0 0
chr14:64541255|64541455 hsa-miR-1293 1 0 0
chr14:64541255|64541455 hsa-miR-1272 0 1 0
chr14:64541255|64541455 hsa-miR-2861 1 0 0
chr14:64541255|64541455 hsa-miR-4507 1 0 0
chr14:64541255|64541455 hsa-miR-1587 1 0 0
chr14:64541255|64541455 hsa-miR-4674 1 1 0
chr14:64541255|64541455 hsa-miR-6068 0 1 0
chr14:64541255|64541455 hsa-miR-4747-3p 1 0 0
chr14:64541255|64541455 hsa-miR-143-3p 1 0 0
chr14:64541255|64541455 hsa-miR-323a-5p 1 0 0
chr14:64541255|64541455 hsa-miR-4665-3p 1 0 0
chr14:64541255|64541455 hsa-miR-6720-5p 1 0 0
chr14:64541255|64541455 hsa-miR-8071 1 0 0
chr14:64541255|64541455 hsa-miR-6089 1 0 0
chr14:64541255|64541455 hsa-miR-8069 1 0 0
chr14:64541255|64541455 hsa-miR-874-3p 1 0 0
chr14:64541255|64541455 hsa-miR-939-3p 1 0 0
chr14:64541255|64541455 hsa-miR-4763-5p 1 0 0
chr14:64541255|64541455 hsa-miR-1909-5p 1 0 0
chr14:64541255|64541455 hsa-miR-1908-3p 1 0 0
chr14:64541255|64541455 hsa-miR-6869-3p 1 0 0
chr14:64541255|64541455 hsa-miR-4632-3p 1 1 0
chr14:64541255|64541455 hsa-miR-5088-3p 0 1 0
chr14:64541255|64541455 hsa-miR-6789-3p 1 0 0
chr14:64541255|64541455 hsa-miR-3200-3p 0 1 0
chr14:64541255|64541455 hsa-miR-7107-5p 1 0 0
chr14:64541255|64541455 hsa-miR-3620-5p 1 0 0
chr14:64541255|64541455 hsa-miR-10392-5p 1 0 0
chr14:64541255|64541455 hsa-miR-1909-3p 1 0 0
chr14:64541255|64541455 hsa-miR-3085-5p 1 0 0
chr14:64541255|64541455 hsa-miR-1199-5p 1 0 0
chr14:64541255|64541455 hsa-miR-6724-5p 1 0 0
chr14:64541255|64541455 hsa-miR-10401-3p 1 0 0
chr14:64541255|64541455 hsa-miR-10400-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr14:64541255|64541455
ORF Type ORF1
Protein Length 67
Nucleotide Length 201
Protein Sequence LGGKVHSAVITVPAYFNDSQRQATKDAGTITGLNVLRIINEPTAAAIAYGLDKKGCAGGEKNVLIFD
Nucleotide Sequence CTGGGGGGCAAGGTGCACAGCGCGGTCATAACGGTCCCGGCCTATTTCAACGACTCGCAGCGCCAGGCCACCAAGGACGCAGGCACCATCACGGGGCTCAATGTGCTGCGCATCATCAACGAGCCCACGGCGGCGGCCATCGCCTACGGCCTGGACAAGAAGGGCTGCGCGGGCGGCGAGAAGAACGTGCTCATCTTTGAC
CircID chr14:64541255|64541455
ORF Type ORF2
Protein Length 33
Nucleotide Length 99
Protein Sequence MCCASSTSPRRRPSPTAWTRRAARAARRTCSSL
Nucleotide Sequence ATGTGCTGCGCATCATCAACGAGCCCACGGCGGCGGCCATCGCCTACGGCCTGGACAAGAAGGGCTGCGCGGGCGGCGAGAAGAACGTGCTCATCTTTG
CircID chr14:64541255|64541455
ORF Type ORF3
Protein Length 32
Nucleotide Length 99
Protein Sequence MAAAVGSLMMRSTLSPVMVPASLVAWRCESLK
Nucleotide Sequence ATGGCCGCCGCCGTGGGCTCGTTGATGATGCGCAGCACATTGAGCCCCGTGATGGTGCCTGCGTCCTTGGTGGCCTGGCGCTGCGAGTCGTTGAAATAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab