CircRNA Information

General Information
circRNA Basic Information
CircID chr14:64743968|64744220
Strand +
CircType exon
Host Gene ENSG00000126822.14;
Algorism CIRI2;
Sequence AGGAGGGGAATAAACAGGGGCCACACACTCACGCACACGCACATCATACCACAGAATGGAAAGCAATAAATTATTGGCTTCATTCCTGCCTGGACCCTAAGAAAAGGCACCGTTACAGAACAAAGCCTCTCCAGGCCACTGCCTGAGTCTCCTGGGGATGGGCTCCTCCATCTGGCTGTGGCCATGGCCAGCCAACGCTGGAGGCCTGAGCAGAGCTTCCTCTCTCTGGGAAGAAGTGAGCTTAAATATTTGG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr14:64743968|64744220 hsa-miR-34a-5p 0 0 1
chr14:64743968|64744220 hsa-miR-34a-3p 0 0 1
chr14:64743968|64744220 hsa-miR-210-5p 0 0 1
chr14:64743968|64744220 hsa-miR-210-3p 0 0 1
chr14:64743968|64744220 hsa-miR-137-5p 0 0 1
chr14:64743968|64744220 hsa-miR-137-3p 0 0 1
chr14:64743968|64744220 hsa-miR-185-5p 0 0 1
chr14:64743968|64744220 hsa-miR-185-3p 0 0 1
chr14:64743968|64744220 hsa-miR-375-5p 0 0 1
chr14:64743968|64744220 hsa-miR-375-3p 0 0 1
chr14:64743968|64744220 hsa-miR-449a 0 0 1
chr14:64743968|64744220 hsa-miR-510-5p 0 0 1
chr14:64743968|64744220 hsa-miR-510-3p 0 0 1
chr14:64743968|64744220 hsa-miR-587 0 0 1
chr14:64743968|64744220 hsa-miR-588 0 0 1
chr14:64743968|64744220 hsa-miR-647 0 0 1
chr14:64743968|64744220 hsa-miR-449b-5p 0 0 1
chr14:64743968|64744220 hsa-miR-449b-3p 0 0 1
chr14:64743968|64744220 hsa-miR-766-5p 0 0 1
chr14:64743968|64744220 hsa-miR-766-3p 0 0 1
chr14:64743968|64744220 hsa-miR-765 0 0 1
chr14:64743968|64744220 hsa-miR-665 1 0 1
chr14:64743968|64744220 hsa-miR-940 0 0 1
chr14:64743968|64744220 hsa-miR-1182 0 0 1
chr14:64743968|64744220 hsa-miR-663b 0 0 1
chr14:64743968|64744220 hsa-miR-1272 0 0 1
chr14:64743968|64744220 hsa-miR-1306-5p 0 0 1
chr14:64743968|64744220 hsa-miR-1306-3p 0 0 1
chr14:64743968|64744220 hsa-miR-1322 0 0 1
chr14:64743968|64744220 hsa-miR-574-5p 1 0 1
chr14:64743968|64744220 hsa-miR-767-3p 0 0 1
chr14:64743968|64744220 hsa-miR-34c-5p 0 0 1
chr14:64743968|64744220 hsa-miR-1274b 0 0 1
chr14:64743968|64744220 hsa-miR-644 0 0 1
chr14:64743968|64744220 hsa-miR-1254 0 0 1
chr14:64743968|64744220 hsa-miR-147 0 0 1
chr14:64743968|64744220 hsa-miR-4658 1 0 0
chr14:64743968|64744220 hsa-miR-4730 1 0 0
chr14:64743968|64744220 hsa-miR-5192 1 0 0
chr14:64743968|64744220 hsa-miR-6765-5p 1 0 0
chr14:64743968|64744220 hsa-miR-6861-5p 1 0 0
chr14:64743968|64744220 hsa-miR-7114-5p 1 0 0
chr14:64743968|64744220 hsa-miR-6746-5p 1 0 0
chr14:64743968|64744220 hsa-miR-6735-3p 1 0 0
chr14:64743968|64744220 hsa-miR-4664-3p 1 0 0
chr14:64743968|64744220 hsa-miR-328-3p 1 0 0
chr14:64743968|64744220 hsa-miR-6851-3p 1 0 0
chr14:64743968|64744220 hsa-miR-1343-5p 1 0 0
chr14:64743968|64744220 hsa-miR-7107-5p 1 0 0
chr14:64743968|64744220 hsa-miR-6875-5p 1 0 0
chr14:64743968|64744220 hsa-miR-3620-5p 1 0 0
chr14:64743968|64744220 hsa-miR-939-5p 1 0 0
chr14:64743968|64744220 hsa-miR-1238-5p 1 0 0
chr14:64743968|64744220 hsa-miR-6511b-5p 1 0 0
chr14:64743968|64744220 hsa-miR-3085-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr14:64743968|64744220
ORF Type ORF1
Protein Length 38
Nucleotide Length 114
Protein Sequence MPESPGDGLLHLAVAMASQRWRPEQSFLSLGRSELKYL
Nucleotide Sequence CTGCCTGAGTCTCCTGGGGATGGGCTCCTCCATCTGGCTGTGGCCATGGCCAGCCAACGCTGGAGGCCTGAGCAGAGCTTCCTCTCTCTGGGAAGAAGTGAGCTTAAATATTTG
CircID chr14:64743968|64744220
ORF Type ORF2
Protein Length 37
Nucleotide Length 111
Protein Sequence MSLLGMGSSIWLWPWPANAGGLSRASSLWEEVSLNIW
Nucleotide Sequence CTGAGTCTCCTGGGGATGGGCTCCTCCATCTGGCTGTGGCCATGGCCAGCCAACGCTGGAGGCCTGAGCAGAGCTTCCTCTCTCTGGGAAGAAGTGAGCTTAAATATTTGG
CircID chr14:64743968|64744220
ORF Type ORF3
Protein Length 38
Nucleotide Length 117
Protein Sequence MLRPPALAGHGHSQMEEPIPRRLRQWPGEALFCNGAFS
Nucleotide Sequence CTGCTCAGGCCTCCAGCGTTGGCTGGCCATGGCCACAGCCAGATGGAGGAGCCCATCCCCAGGAGACTCAGGCAGTGGCCTGGAGAGGCTTTGTTCTGTAACGGTGCCTTTTCTTAG
CircID chr14:64743968|64744220
ORF Type ORF4
Protein Length 63
Nucleotide Length 189
Protein Sequence MAMATARWRSPSPGDSGSGLERLCSVTVPFLRVQAGMKPIIYCFPFCGMMCVCVSVWPLFIPL
Nucleotide Sequence CTGGCCATGGCCACAGCCAGATGGAGGAGCCCATCCCCAGGAGACTCAGGCAGTGGCCTGGAGAGGCTTTGTTCTGTAACGGTGCCTTTTCTTAGGGTCCAGGCAGGAATGAAGCCAATAATTTATTGCTTTCCATTCTGTGGTATGATGTGCGTGTGCGTGAGTGTGTGGCCCCTGTTTATTCCCCTC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab