CircRNA Information

General Information
circRNA Basic Information
CircID chr14:69461307|69461474
Strand -
CircType exon
Host Gene ENSG00000029364.10;
Algorism CIRI2;
Sequence TGCTCCATTCCCCTCACTTATTCTCCAGTTAATTGCTTGTCAGTTCCATTTCAAGAAAGCAGTGATGTTCCAGGTTTGATTCAGTTTTCCTGTGCACACTATTGCCAAATTTTTTTTTAGCAAAGATTCTGCACTGGAACGTAGACAGTTGGAAACAGTACTACCTAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr14:69461307|69461474 hsa-miR-96-5p 0 0 1
chr14:69461307|69461474 hsa-miR-96-3p 0 0 1
chr14:69461307|69461474 hsa-miR-148a-5p 0 0 1
chr14:69461307|69461474 hsa-miR-148a-3p 0 0 1
chr14:69461307|69461474 hsa-miR-182-5p 0 0 1
chr14:69461307|69461474 hsa-miR-182-3p 0 0 1
chr14:69461307|69461474 hsa-miR-152-5p 0 0 1
chr14:69461307|69461474 hsa-miR-152-3p 0 0 1
chr14:69461307|69461474 hsa-miR-148b-5p 0 0 1
chr14:69461307|69461474 hsa-miR-148b-3p 0 0 1
chr14:69461307|69461474 hsa-miR-196b-5p 0 0 1
chr14:69461307|69461474 hsa-miR-196b-3p 0 0 1
chr14:69461307|69461474 hsa-miR-452-5p 0 0 1
chr14:69461307|69461474 hsa-miR-452-3p 0 0 1
chr14:69461307|69461474 hsa-miR-526b-5p 0 0 1
chr14:69461307|69461474 hsa-miR-526b-3p 0 0 1
chr14:69461307|69461474 hsa-miR-578 0 0 1
chr14:69461307|69461474 hsa-miR-619-5p 0 0 1
chr14:69461307|69461474 hsa-miR-619-3p 0 0 1
chr14:69461307|69461474 hsa-miR-648 0 1 1
chr14:69461307|69461474 hsa-miR-1271-5p 0 0 1
chr14:69461307|69461474 hsa-miR-1271-3p 0 0 1
chr14:69461307|69461474 hsa-miR-298 0 0 1
chr14:69461307|69461474 hsa-miR-934 0 0 1
chr14:69461307|69461474 hsa-miR-548e-5p 0 0 1
chr14:69461307|69461474 hsa-miR-548e-3p 0 0 1
chr14:69461307|69461474 hsa-miR-1278 0 0 1
chr14:69461307|69461474 hsa-miR-1825 0 0 1
chr14:69461307|69461474 hsa-miR-145-5p 0 0 1
chr14:69461307|69461474 hsa-miR-199a-5p 0 0 1
chr14:69461307|69461474 hsa-miR-490-3p 0 1 1
chr14:69461307|69461474 hsa-miR-423-5p 0 0 1
chr14:69461307|69461474 hsa-miR-199b-5p 0 0 1
chr14:69461307|69461474 hsa-miR-582-3p 0 0 1
chr14:69461307|69461474 hsa-miR-548a-3p 0 0 1
chr14:69461307|69461474 hsa-miR-548f 0 0 1
chr14:69461307|69461474 hsa-miR-196a 0 0 1
chr14:69461307|69461474 hsa-miR-203 0 0 1
chr14:69461307|69461474 hsa-miR-499-3p 0 0 1
chr14:69461307|69461474 hsa-miR-765 1 0 0
chr14:69461307|69461474 hsa-miR-920 1 0 0
chr14:69461307|69461474 hsa-miR-933 1 1 0
chr14:69461307|69461474 hsa-miR-3128 0 1 0
chr14:69461307|69461474 hsa-miR-4271 1 0 0
chr14:69461307|69461474 hsa-miR-3135b 1 0 0
chr14:69461307|69461474 hsa-miR-4513 1 0 0
chr14:69461307|69461474 hsa-miR-4516 1 0 0
chr14:69461307|69461474 hsa-miR-4526 1 0 0
chr14:69461307|69461474 hsa-miR-6165 1 0 0
chr14:69461307|69461474 hsa-miR-8052 1 0 0
chr14:69461307|69461474 hsa-miR-8089 1 0 0
chr14:69461307|69461474 hsa-miR-12114 1 0 0
chr14:69461307|69461474 hsa-miR-134-5p 1 0 0
chr14:69461307|69461474 hsa-miR-6734-5p 0 1 0
chr14:69461307|69461474 hsa-miR-6857-5p 1 0 0
chr14:69461307|69461474 hsa-miR-1236-5p 1 0 0
chr14:69461307|69461474 hsa-miR-7847-3p 1 0 0
chr14:69461307|69461474 hsa-miR-6746-5p 1 0 0
chr14:69461307|69461474 hsa-miR-7154-3p 1 0 0
chr14:69461307|69461474 hsa-miR-4655-5p 1 0 0
chr14:69461307|69461474 hsa-miR-6716-5p 0 1 0
chr14:69461307|69461474 hsa-miR-4738-3p 0 1 0
chr14:69461307|69461474 hsa-miR-4671-3p 0 1 0
chr14:69461307|69461474 hsa-miR-30d-3p 0 1 0
chr14:69461307|69461474 hsa-miR-199b-3p 0 1 0
chr14:69461307|69461474 hsa-miR-199a-3p 0 1 0
chr14:69461307|69461474 hsa-miR-892c-3p 0 1 0
chr14:69461307|69461474 hsa-miR-4700-5p 1 0 0
chr14:69461307|69461474 hsa-miR-3679-5p 1 0 0
chr14:69461307|69461474 hsa-miR-4646-5p 1 0 0
chr14:69461307|69461474 hsa-miR-541-3p 1 0 0
chr14:69461307|69461474 hsa-miR-4667-5p 1 0 0
chr14:69461307|69461474 hsa-miR-7153-5p 0 1 0
chr14:69461307|69461474 hsa-miR-499b-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr14:69461307|69461474
ORF Type ORF1
Protein Length 27
Nucleotide Length 84
Protein Sequence MSVPFQESSDVPGLIQFSCAHYCQIFF
Nucleotide Sequence TTGTCAGTTCCATTTCAAGAAAGCAGTGATGTTCCAGGTTTGATTCAGTTTTCCTGTGCACACTATTGCCAAATTTTTTTTTAG
CircID chr14:69461307|69461474
ORF Type ORF2
Protein Length 26
Nucleotide Length 78
Protein Sequence MCTLLPNFFLAKILHWNVDSWKQYYL
Nucleotide Sequence CTGTGCACACTATTGCCAAATTTTTTTTTAGCAAAGATTCTGCACTGGAACGTAGACAGTTGGAAACAGTACTACCTA
CircID chr14:69461307|69461474
ORF Type ORF3
Protein Length 27
Nucleotide Length 84
Protein Sequence MLKKNLAIVCTGKLNQTWNITAFLKWN
Nucleotide Sequence TTGCTAAAAAAAAATTTGGCAATAGTGTGCACAGGAAAACTGAATCAAACCTGGAACATCACTGCTTTCTTGAAATGGAACTGA
CircID chr14:69461307|69461474
ORF Type ORF4
Protein Length 39
Nucleotide Length 120
Protein Sequence MSTFQCRIFAKKKFGNSVHRKTESNLEHHCFLEMELTSN
Nucleotide Sequence CTGTCTACGTTCCAGTGCAGAATCTTTGCTAAAAAAAAATTTGGCAATAGTGTGCACAGGAAAACTGAATCAAACCTGGAACATCACTGCTTTCTTGAAATGGAACTGACAAGCAATTAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab