CircRNA Information

General Information
circRNA Basic Information
CircID chr14:75047503|75047758
Strand +
CircType exon
Host Gene ENSG00000119684.14;
Algorism CIRI2;
Sequence CTGGTCCCACACGTGCCCAAGAAACATTTGGAAATAGAACACGTCATTCAGTTGAAACTCCAGACATCAAAGATTTAGCCAGCACTTTAAGTAAAGAATCTGGTCAATTGCCCAACAAAAAAAATTGCAGAACGAATATAAGTTATGGGCTAGAGAATGAACCTACAGCAACTTATACAATGTTTTCTGCTTTTCAGGAAGGTAGCAAAAAATCACAAACAGATTGCATATTATCTGATACATCCCCCTCTTTCCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr14:75047503|75047758 hsa-miR-17-5p 0 0 1
chr14:75047503|75047758 hsa-miR-17-3p 0 0 1
chr14:75047503|75047758 hsa-miR-20a-5p 0 0 1
chr14:75047503|75047758 hsa-miR-20a-3p 0 0 1
chr14:75047503|75047758 hsa-miR-93-5p 0 0 1
chr14:75047503|75047758 hsa-miR-93-3p 0 0 1
chr14:75047503|75047758 hsa-miR-106a-5p 0 0 1
chr14:75047503|75047758 hsa-miR-106a-3p 0 0 1
chr14:75047503|75047758 hsa-miR-106b-5p 0 0 1
chr14:75047503|75047758 hsa-miR-106b-3p 0 0 1
chr14:75047503|75047758 hsa-miR-302a-5p 0 0 1
chr14:75047503|75047758 hsa-miR-302a-3p 0 0 1
chr14:75047503|75047758 hsa-miR-302b-5p 0 0 1
chr14:75047503|75047758 hsa-miR-302b-3p 0 0 1
chr14:75047503|75047758 hsa-miR-302c-5p 0 0 1
chr14:75047503|75047758 hsa-miR-302c-3p 0 0 1
chr14:75047503|75047758 hsa-miR-302d-5p 0 0 1
chr14:75047503|75047758 hsa-miR-302d-3p 0 0 1
chr14:75047503|75047758 hsa-miR-372-5p 0 0 1
chr14:75047503|75047758 hsa-miR-372-3p 0 0 1
chr14:75047503|75047758 hsa-miR-373-5p 0 0 1
chr14:75047503|75047758 hsa-miR-373-3p 0 0 1
chr14:75047503|75047758 hsa-miR-382-5p 0 0 1
chr14:75047503|75047758 hsa-miR-382-3p 0 0 1
chr14:75047503|75047758 hsa-miR-20b-5p 0 0 1
chr14:75047503|75047758 hsa-miR-20b-3p 0 0 1
chr14:75047503|75047758 hsa-miR-520e-5p 0 0 1
chr14:75047503|75047758 hsa-miR-520e-3p 0 0 1
chr14:75047503|75047758 hsa-miR-520b-5p 0 0 1
chr14:75047503|75047758 hsa-miR-520b-3p 0 0 1
chr14:75047503|75047758 hsa-miR-519d-5p 0 0 1
chr14:75047503|75047758 hsa-miR-519d-3p 0 0 1
chr14:75047503|75047758 hsa-miR-568 0 0 1
chr14:75047503|75047758 hsa-miR-570-5p 0 0 1
chr14:75047503|75047758 hsa-miR-570-3p 0 0 1
chr14:75047503|75047758 hsa-miR-578 0 0 1
chr14:75047503|75047758 hsa-miR-583 0 0 1
chr14:75047503|75047758 hsa-miR-635 0 1 1
chr14:75047503|75047758 hsa-miR-758-5p 0 0 1
chr14:75047503|75047758 hsa-miR-758-3p 0 0 1
chr14:75047503|75047758 hsa-miR-1298-5p 0 0 1
chr14:75047503|75047758 hsa-miR-1298-3p 0 0 1
chr14:75047503|75047758 hsa-miR-1231 0 1 1
chr14:75047503|75047758 hsa-miR-1200 0 0 1
chr14:75047503|75047758 hsa-miR-1305 0 0 1
chr14:75047503|75047758 hsa-miR-1251-5p 0 0 1
chr14:75047503|75047758 hsa-miR-1251-3p 0 0 1
chr14:75047503|75047758 hsa-miR-302e 0 0 1
chr14:75047503|75047758 hsa-miR-129-5p 0 0 1
chr14:75047503|75047758 hsa-miR-512-3p 0 0 1
chr14:75047503|75047758 hsa-miR-361-5p 0 0 1
chr14:75047503|75047758 hsa-miR-654-3p 0 0 1
chr14:75047503|75047758 hsa-miR-520d-3p 0 1 1
chr14:75047503|75047758 hsa-miR-520a-3p 0 0 1
chr14:75047503|75047758 hsa-miR-520c-3p 0 0 1
chr14:75047503|75047758 hsa-miR-516b 0 0 1
chr14:75047503|75047758 hsa-miR-544 0 0 1
chr14:75047503|75047758 hsa-miR-1257 0 1 0
chr14:75047503|75047758 hsa-miR-3132 1 0 0
chr14:75047503|75047758 hsa-miR-3147 1 1 0
chr14:75047503|75047758 hsa-miR-4525 1 1 0
chr14:75047503|75047758 hsa-miR-5194 1 0 0
chr14:75047503|75047758 hsa-miR-5698 1 0 0
chr14:75047503|75047758 hsa-miR-4722-5p 1 0 0
chr14:75047503|75047758 hsa-miR-6730-5p 1 0 0
chr14:75047503|75047758 hsa-miR-197-5p 1 0 0
chr14:75047503|75047758 hsa-miR-3151-5p 1 0 0
chr14:75047503|75047758 hsa-miR-6798-5p 1 0 0
chr14:75047503|75047758 hsa-miR-6782-5p 1 0 0
chr14:75047503|75047758 hsa-miR-7161-3p 1 1 0
chr14:75047503|75047758 hsa-miR-5580-5p 0 1 0
chr14:75047503|75047758 hsa-miR-5010-5p 1 1 0
chr14:75047503|75047758 hsa-miR-4482-3p 1 0 0
chr14:75047503|75047758 hsa-miR-11181-3p 1 0 0
chr14:75047503|75047758 hsa-miR-6774-5p 0 1 0
chr14:75047503|75047758 hsa-miR-6795-5p 1 0 0
chr14:75047503|75047758 hsa-miR-4723-5p 1 0 0
chr14:75047503|75047758 hsa-miR-6758-5p 1 0 0
chr14:75047503|75047758 hsa-miR-6891-5p 1 1 0
chr14:75047503|75047758 hsa-miR-9983-3p 0 1 0
chr14:75047503|75047758 hsa-miR-1250-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr14:75047503|75047758
ORF Type ORF1
Protein Length 25
Nucleotide Length 78
Protein Sequence LVPHVPKKHLEIEHVIQLKLQTSKI
Nucleotide Sequence CTGGTCCCACACGTGCCCAAGAAACATTTGGAAATAGAACACGTCATTCAGTTGAAACTCCAGACATCAAAGATTTAG
CircID chr14:75047503|75047758
ORF Type ORF2
Protein Length 33
Nucleotide Length 99
Protein Sequence MNLQQLIQCFLLFRKVAKNHKQIAYYLIHPPLS
Nucleotide Sequence ATGAACCTACAGCAACTTATACAATGTTTTCTGCTTTTCAGGAAGGTAGCAAAAAATCACAAACAGATTGCATATTATCTGATACATCCCCCTCTTTCC
CircID chr14:75047503|75047758
ORF Type ORF3
Protein Length 49
Nucleotide Length 147
Protein Sequence MPNKKNCRTNISYGLENEPTATYTMFSAFQEGSKKSQTDCILSDTSPSF
Nucleotide Sequence TTGCCCAACAAAAAAAATTGCAGAACGAATATAAGTTATGGGCTAGAGAATGAACCTACAGCAACTTATACAATGTTTTCTGCTTTTCAGGAAGGTAGCAAAAAATCACAAACAGATTGCATATTATCTGATACATCCCCCTCTTTC
CircID chr14:75047503|75047758
ORF Type ORF4
Protein Length 26
Nucleotide Length 81
Protein Sequence MYQIICNLFVIFCYLPEKQKTLYKLL
Nucleotide Sequence ATGTATCAGATAATATGCAATCTGTTTGTGATTTTTTGCTACCTTCCTGAAAAGCAGAAAACATTGTATAAGTTGCTGTAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab