CircRNA Information

General Information
circRNA Basic Information
CircID chr14:75782487|75793100
Strand +
CircType exon
Host Gene ENSG00000119685.19;
Algorism find_circ;CIRI2;DCC;
Sequence ATCACCCTGAGACTATAATGGAAGAAGTGAAAATAAAGCCACCTAAACAGCAACAGACGACAGAAATTCATTCTGATAAATTATCTCGATTTACCACTTCAGCAGAAAAAGAGGCAAAATTAGTTTATAGCAATTCCTCCTCTGGTCCTACTGCTACTCTGCAGAAAATTCCCAACACCCATTTGTCATCTGTTACAACCTCTGACCTCTCTCCAGGGCCTTGCCACCATTCTTCTTTATCTCAAATTCCTTCAGCTATCCCCAGCATGCCTCACCAGCCAACAATTTTACTGAACACAGTCTCTGCCAGTGCTTCTCCCTGCCTACATCCCGGGGCACAGAACATCCCAAGCCCTACTGGCCTGCCACGCTGTCGATCAGGAAGTCACACCATTGGTCCCTTTTCTTCCTTCCAAAGTGCTGCACACATCTATAGCCAGAAACTGTCTCGTCCCTCTTCAGCAAAGGCAGGATCGTGCTATCTAAACAAGCATCATTCAGGAATAGCCAAAACACAAAAAGAGGGAGAAGATGCTTCTTTATATAGCAAACGGTACAACCAAAGTATGGTTACAGCTGAACTTCAGCGGCTAGCTGAGAAGCAGGCAGCGAGACAGTATTCTCCATCCAGCCACATCAACCTCCTCACCCAACAG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr14:75782487|75793100 hsa-miR-9-5p 0 1 1
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py


circRNA Open Reading Frame (ORF)
CircID chr14:75782487|75793100
ORF Type ORF1
Protein Length 213
Nucleotide Length 639
Protein Sequence MEEVKIKPPKQQQTTEIHSDKLSRFTTSAEKEAKLVYSNSSSGPTATLQKIPNTHLSSVTTSDLSPGPCHHSSLSQIPSAIPSMPHQPTILLNTVSASASPCLHPGAQNIPSPTGLPRCRSGSHTIGPFSSFQSAAHIYSQKLSRPSSAKAGSCYLNKHHSGIAKTQKEGEDASLYSKRYNQSMVTAELQRLAEKQAARQYSPSSHINLLTQQ
Nucleotide Sequence ATGGAAGAAGTGAAAATAAAGCCACCTAAACAGCAACAGACGACAGAAATTCATTCTGATAAATTATCTCGATTTACCACTTCAGCAGAAAAAGAGGCAAAATTAGTTTATAGCAATTCCTCCTCTGGTCCTACTGCTACTCTGCAGAAAATTCCCAACACCCATTTGTCATCTGTTACAACCTCTGACCTCTCTCCAGGGCCTTGCCACCATTCTTCTTTATCTCAAATTCCTTCAGCTATCCCCAGCATGCCTCACCAGCCAACAATTTTACTGAACACAGTCTCTGCCAGTGCTTCTCCCTGCCTACATCCCGGGGCACAGAACATCCCAAGCCCTACTGGCCTGCCACGCTGTCGATCAGGAAGTCACACCATTGGTCCCTTTTCTTCCTTCCAAAGTGCTGCACACATCTATAGCCAGAAACTGTCTCGTCCCTCTTCAGCAAAGGCAGGATCGTGCTATCTAAACAAGCATCATTCAGGAATAGCCAAAACACAAAAAGAGGGAGAAGATGCTTCTTTATATAGCAAACGGTACAACCAAAGTATGGTTACAGCTGAACTTCAGCGGCTAGCTGAGAAGCAGGCAGCGAGACAGTATTCTCCATCCAGCCACATCAACCTCCTCACCCAACAG

CircID chr14:75782487|75793100
ORF Type ORF2
Protein Length 72
Nucleotide Length 216
Protein Sequence LPPFFFISNSFSYPQHASPANNFTEHSLCQCFSLPTSRGTEHPKPYWPATLSIRKSHHWSLFFLPKCCTHL*
Nucleotide Sequence TTGCCACCATTCTTCTTTATCTCAAATTCCTTCAGCTATCCCCAGCATGCCTCACCAGCCAACAATTTTACTGAACACAGTCTCTGCCAGTGCTTCTCCCTGCCTACATCCCGGGGCACAGAACATCCCAAGCCCTACTGGCCTGCCACGCTGTCGATCAGGAAGTCACACCATTGGTCCCTTTTCTTCCTTCCAAAGTGCTGCACACATCTATAG

CircID chr14:75782487|75793100
ORF Type ORF3
Protein Length 59
Nucleotide Length 177
Protein Sequence VLLPAYIPGHRTSQALLACHAVDQEVTPLVPFLPSKVLHTSIARNCLVPLQQRQDRAI*
Nucleotide Sequence GTGCTTCTCCCTGCCTACATCCCGGGGCACAGAACATCCCAAGCCCTACTGGCCTGCCACGCTGTCGATCAGGAAGTCACACCATTGGTCCCTTTTCTTCCTTCCAAAGTGCTGCACACATCTATAGCCAGAAACTGTCTCGTCCCTCTTCAGCAAAGGCAGGATCGTGCTATCTAA

CircID chr14:75782487|75793100
ORF Type ORF4
Protein Length 57
Nucleotide Length 171
Protein Sequence FIAIPPLVLLLLCRKFPTPICHLLQPLTSLQGLATILLYLKFLQLSPACLTSQQFY*
Nucleotide Sequence TTTATAGCAATTCCTCCTCTGGTCCTACTGCTACTCTGCAGAAAATTCCCAACACCCATTTGTCATCTGTTACAACCTCTGACCTCTCTCCAGGGCCTTGCCACCATTCTTCTTTATCTCAAATTCCTTCAGCTATCCCCAGCATGCCTCACCAGCCAACAATTTTACTGA

CircID chr14:75782487|75793100
ORF Type ORF5
Protein Length 54
Nucleotide Length 162
Protein Sequence VFWLFLNDACLDSTILPLLKRDETVSGYRCVQHFGRKKRDQWCDFLIDSVAGQ*
Nucleotide Sequence GTGTTTTGGCTATTCCTGAATGATGCTTGTTTAGATAGCACGATCCTGCCTTTGCTGAAGAGGGACGAGACAGTTTCTGGCTATAGATGTGTGCAGCACTTTGGAAGGAAGAAAAGGGACCAATGGTGTGACTTCCTGATCGACAGCGTGGCAGGCCAGTAG

RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
chr14:75782487|75793100 NOP56 0 1 2
chr14:75782487|75793100 ELAVL1 2 1 3
chr14:75782487|75793100 TBRG4 0 0 1
chr14:75782487|75793100 CELF2 0 0 1
chr14:75782487|75793100 PRPF8 1 2 0
chr14:75782487|75793100 UPF1 1 0 0
chr14:75782487|75793100 TAF15 0 1 0
chr14:75782487|75793100 FMR1 0 0 1
chr14:75782487|75793100 CPSF6 2 0 0
chr14:75782487|75793100 NUDT21 1 1 0
chr14:75782487|75793100 TROVE2 1 0 0
chr14:75782487|75793100 FUS 0 1 0
chr14:75782487|75793100 NOP58 1 2 7
chr14:75782487|75793100 U2AF1 0 0 1
chr14:75782487|75793100 U2AF2 3 12 3
chr14:75782487|75793100 DDX54 2 0 7
chr14:75782487|75793100 HNRNPA2B1 1 0 0
chr14:75782487|75793100 SF3A3 1 0 0
chr14:75782487|75793100 FIP1L1 1 2 0
chr14:75782487|75793100 PTBP1 2 0 2
chr14:75782487|75793100 HNRNPC 27 0 12
chr14:75782487|75793100 FXR1 0 0 1
chr14:75782487|75793100 IGF2BP1 1 1 7
chr14:75782487|75793100 IGF2BP3 0 0 4
chr14:75782487|75793100 IGF2BP2 0 1 10
chr14:75782487|75793100 HNRNPUL1 1 0 0
chr14:75782487|75793100 TARDBP 1 0 0
chr14:75782487|75793100 RBM47 1 0 1
chr14:75782487|75793100 CSTF2T 3 0 2
chr14:75782487|75793100 CSTF2 1 0 0
chr14:75782487|75793100 RBM22 0 1 0
chr14:75782487|75793100 AGO2 0 0 1
chr14:75782487|75793100 EIF4A3 5 2 10
chr14:75782487|75793100 FBL 0 0 4