CircRNA Information

General Information
circRNA Basic Information
CircID chr14:90406933|90407168
Strand +
CircType exon
Host Gene ENSG00000198668.9;
Algorism CIRI2;
Sequence CAGGGCGGAAGGCTACAGTGGATTCTGCCTCACCTCTGCTCAAAACTGGAACTCAGCATTCCCTGGAGGGGGAGGGTGTAGGGTTTCTGGTTCCCAGACAGGATCCTGGCCATACAAGAATCCTGTTTCAAAGGTAGTCTTTTAGGATACGCTGCAGGACCACTAAGAGTCCACCCAGCTTCTAAAGACTTGAGGGTTAGAAGGCTACATTTCGAAAAAACAAGTCAAATATCCCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr14:90406933|90407168 hsa-miR-494-5p 0 0 1
chr14:90406933|90407168 hsa-miR-494-3p 0 0 1
chr14:90406933|90407168 hsa-miR-578 0 1 1
chr14:90406933|90407168 hsa-miR-643 0 1 1
chr14:90406933|90407168 hsa-miR-1264 0 0 1
chr14:90406933|90407168 hsa-miR-297 0 0 1
chr14:90406933|90407168 hsa-miR-1183 0 0 1
chr14:90406933|90407168 hsa-miR-1231 0 1 1
chr14:90406933|90407168 hsa-miR-1293 0 0 1
chr14:90406933|90407168 hsa-miR-1292-5p 0 0 1
chr14:90406933|90407168 hsa-miR-1292-3p 0 0 1
chr14:90406933|90407168 hsa-miR-1827 0 0 1
chr14:90406933|90407168 hsa-miR-140-5p 0 0 1
chr14:90406933|90407168 hsa-miR-145-5p 0 0 1
chr14:90406933|90407168 hsa-miR-1184 0 1 1
chr14:90406933|90407168 hsa-miR-661 1 0 0
chr14:90406933|90407168 hsa-miR-658 1 1 0
chr14:90406933|90407168 hsa-miR-3137 0 1 0
chr14:90406933|90407168 hsa-miR-3149 0 1 0
chr14:90406933|90407168 hsa-miR-4314 0 1 0
chr14:90406933|90407168 hsa-miR-4257 0 1 0
chr14:90406933|90407168 hsa-miR-4270 1 0 0
chr14:90406933|90407168 hsa-miR-4421 0 1 0
chr14:90406933|90407168 hsa-miR-4468 0 1 0
chr14:90406933|90407168 hsa-miR-4469 1 0 0
chr14:90406933|90407168 hsa-miR-4682 0 1 0
chr14:90406933|90407168 hsa-miR-6069 1 0 0
chr14:90406933|90407168 hsa-miR-8055 0 1 0
chr14:90406933|90407168 hsa-miR-323a-5p 1 1 0
chr14:90406933|90407168 hsa-miR-6510-5p 0 1 0
chr14:90406933|90407168 hsa-miR-8071 0 1 0
chr14:90406933|90407168 hsa-miR-7160-5p 1 0 0
chr14:90406933|90407168 hsa-miR-4655-5p 1 0 0
chr14:90406933|90407168 hsa-miR-5589-5p 1 1 0
chr14:90406933|90407168 hsa-miR-2467-3p 0 1 0
chr14:90406933|90407168 hsa-miR-6782-5p 0 1 0
chr14:90406933|90407168 hsa-miR-4793-5p 1 0 0
chr14:90406933|90407168 hsa-miR-7854-3p 0 1 0
chr14:90406933|90407168 hsa-miR-4661-3p 0 1 0
chr14:90406933|90407168 hsa-miR-3614-3p 0 1 0
chr14:90406933|90407168 hsa-miR-3160-5p 0 1 0
chr14:90406933|90407168 hsa-miR-6865-3p 0 1 0
chr14:90406933|90407168 hsa-miR-6732-3p 1 1 0
chr14:90406933|90407168 hsa-miR-6775-5p 1 0 0
chr14:90406933|90407168 hsa-miR-6743-5p 1 0 0
chr14:90406933|90407168 hsa-miR-6754-5p 1 0 0
chr14:90406933|90407168 hsa-miR-6722-3p 1 0 0
chr14:90406933|90407168 hsa-miR-4685-5p 1 0 0
chr14:90406933|90407168 hsa-miR-6735-5p 1 0 0
chr14:90406933|90407168 hsa-miR-4646-5p 0 1 0
chr14:90406933|90407168 hsa-miR-4701-5p 1 0 0
chr14:90406933|90407168 hsa-miR-5195-3p 0 1 0
chr14:90406933|90407168 hsa-miR-9902 0 1 0
chr14:90406933|90407168 hsa-miR-203b-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr14:90406933|90407168
ORF Type ORF1
Protein Length 43
Nucleotide Length 129
Protein Sequence MAIQESCFKGSLLGYAAGPLRVHPASKDLRVRRLHFEKTSQIS
Nucleotide Sequence CTGGCCATACAAGAATCCTGTTTCAAAGGTAGTCTTTTAGGATACGCTGCAGGACCACTAAGAGTCCACCCAGCTTCTAAAGACTTGAGGGTTAGAAGGCTACATTTCGAAAAAACAAGTCAAATATCC
CircID chr14:90406933|90407168
ORF Type ORF2
Protein Length 33
Nucleotide Length 102
Protein Sequence MLKTGTQHSLEGEGVGFLVPRQDPGHTRILFQR
Nucleotide Sequence CTGCTCAAAACTGGAACTCAGCATTCCCTGGAGGGGGAGGGTGTAGGGTTTCTGGTTCCCAGACAGGATCCTGGCCATACAAGAATCCTGTTTCAAAGGTAG
CircID chr14:90406933|90407168
ORF Type ORF3
Protein Length 33
Nucleotide Length 102
Protein Sequence MKQDSCMARILSGNQKPYTLPLQGMLSSSFEQR
Nucleotide Sequence TTGAAACAGGATTCTTGTATGGCCAGGATCCTGTCTGGGAACCAGAAACCCTACACCCTCCCCCTCCAGGGAATGCTGAGTTCCAGTTTTGAGCAGAGGTGA
CircID chr14:90406933|90407168
ORF Type ORF4
Protein Length 25
Nucleotide Length 78
Protein Sequence MYGQDPVWEPETLHPPPPGNAEFQF
Nucleotide Sequence TTGTATGGCCAGGATCCTGTCTGGGAACCAGAAACCCTACACCCTCCCCCTCCAGGGAATGCTGAGTTCCAGTTTTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab