CircRNA Information

General Information
circRNA Basic Information
CircID chr14:90407047|90407202
Strand +
CircType exon
Host Gene ENSG00000198668.9;
Algorism CIRI2;
Sequence ACCCAACGCCTGGGCTGGTCATCCCCCCAAATACCAGGGCGGAAGGCTACAGTGGATTCTGCCTCACCTCTGCTCAAAACTGGAACTCAGCATTCCCTGGAGGGGGAGGGTGTAGGGTTTCTGGTTCCCAGACAGGATCCTGGCCATACAAGAATC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr14:90407047|90407202 hsa-miR-578 0 1 1
chr14:90407047|90407202 hsa-miR-643 0 1 1
chr14:90407047|90407202 hsa-miR-297 0 0 1
chr14:90407047|90407202 hsa-miR-1183 0 0 1
chr14:90407047|90407202 hsa-miR-1231 0 1 1
chr14:90407047|90407202 hsa-miR-1275 0 0 1
chr14:90407047|90407202 hsa-miR-1292-5p 0 0 1
chr14:90407047|90407202 hsa-miR-1292-3p 0 0 1
chr14:90407047|90407202 hsa-miR-1827 0 0 1
chr14:90407047|90407202 hsa-miR-145-5p 0 0 1
chr14:90407047|90407202 hsa-miR-612 1 0 0
chr14:90407047|90407202 hsa-miR-663a 1 0 0
chr14:90407047|90407202 hsa-miR-658 1 1 0
chr14:90407047|90407202 hsa-miR-3137 0 1 0
chr14:90407047|90407202 hsa-miR-3149 0 1 0
chr14:90407047|90407202 hsa-miR-4297 0 1 0
chr14:90407047|90407202 hsa-miR-4314 0 1 0
chr14:90407047|90407202 hsa-miR-4257 1 1 0
chr14:90407047|90407202 hsa-miR-4270 1 0 0
chr14:90407047|90407202 hsa-miR-4421 0 1 0
chr14:90407047|90407202 hsa-miR-4468 0 1 0
chr14:90407047|90407202 hsa-miR-4469 1 0 0
chr14:90407047|90407202 hsa-miR-4518 1 0 0
chr14:90407047|90407202 hsa-miR-4525 0 1 0
chr14:90407047|90407202 hsa-miR-4656 1 0 0
chr14:90407047|90407202 hsa-miR-4663 1 0 0
chr14:90407047|90407202 hsa-miR-4682 1 1 0
chr14:90407047|90407202 hsa-miR-5685 0 1 0
chr14:90407047|90407202 hsa-miR-6069 1 0 0
chr14:90407047|90407202 hsa-miR-6860 1 0 0
chr14:90407047|90407202 hsa-miR-8055 0 1 0
chr14:90407047|90407202 hsa-miR-6734-5p 1 0 0
chr14:90407047|90407202 hsa-miR-6765-5p 1 0 0
chr14:90407047|90407202 hsa-miR-6799-5p 1 0 0
chr14:90407047|90407202 hsa-miR-6510-5p 1 1 0
chr14:90407047|90407202 hsa-miR-6744-5p 0 1 0
chr14:90407047|90407202 hsa-miR-7160-5p 1 0 0
chr14:90407047|90407202 hsa-miR-4655-5p 1 0 0
chr14:90407047|90407202 hsa-miR-6793-5p 1 0 0
chr14:90407047|90407202 hsa-miR-6732-5p 1 0 0
chr14:90407047|90407202 hsa-miR-2467-3p 0 1 0
chr14:90407047|90407202 hsa-miR-6782-5p 1 1 0
chr14:90407047|90407202 hsa-miR-7109-5p 1 1 0
chr14:90407047|90407202 hsa-miR-4793-5p 1 0 0
chr14:90407047|90407202 hsa-miR-7854-3p 0 1 0
chr14:90407047|90407202 hsa-miR-4787-5p 1 0 0
chr14:90407047|90407202 hsa-miR-5010-5p 1 1 0
chr14:90407047|90407202 hsa-miR-4661-3p 0 1 0
chr14:90407047|90407202 hsa-miR-3614-3p 0 1 0
chr14:90407047|90407202 hsa-miR-6865-3p 0 1 0
chr14:90407047|90407202 hsa-miR-6732-3p 1 1 0
chr14:90407047|90407202 hsa-miR-6775-5p 1 0 0
chr14:90407047|90407202 hsa-miR-6743-5p 1 0 0
chr14:90407047|90407202 hsa-miR-6752-5p 1 0 0
chr14:90407047|90407202 hsa-miR-6754-5p 1 0 0
chr14:90407047|90407202 hsa-miR-6803-5p 1 0 0
chr14:90407047|90407202 hsa-miR-6842-5p 1 0 0
chr14:90407047|90407202 hsa-miR-6722-3p 1 0 0
chr14:90407047|90407202 hsa-miR-6751-5p 1 0 0
chr14:90407047|90407202 hsa-miR-6774-5p 1 0 0
chr14:90407047|90407202 hsa-miR-7111-5p 1 0 0
chr14:90407047|90407202 hsa-miR-328-5p 1 0 0
chr14:90407047|90407202 hsa-miR-4685-5p 1 0 0
chr14:90407047|90407202 hsa-miR-6735-5p 1 0 0
chr14:90407047|90407202 hsa-miR-6795-5p 1 0 0
chr14:90407047|90407202 hsa-miR-3187-5p 1 0 0
chr14:90407047|90407202 hsa-miR-4646-5p 0 1 0
chr14:90407047|90407202 hsa-miR-6750-5p 1 0 0
chr14:90407047|90407202 hsa-miR-4701-5p 1 0 0
chr14:90407047|90407202 hsa-miR-5195-3p 0 1 0
chr14:90407047|90407202 hsa-miR-9902 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr14:90407047|90407202
ORF Type ORF1
Protein Length 49
Nucleotide Length 147
Protein Sequence MGWSSPQIPGRKATVDSASPLLKTGTQHSLEGEGVGFLVPRQDPGHTRI
Nucleotide Sequence CTGGGCTGGTCATCCCCCCAAATACCAGGGCGGAAGGCTACAGTGGATTCTGCCTCACCTCTGCTCAAAACTGGAACTCAGCATTCCCTGGAGGGGGAGGGTGTAGGGTTTCTGGTTCCCAGACAGGATCCTGGCCATACAAGAATC
CircID chr14:90407047|90407202
ORF Type ORF2
Protein Length 47
Nucleotide Length 141
Protein Sequence MVIPPNTRAEGYSGFCLTSAQNWNSAFPGGGGCRVSGSQTGSWPYKN
Nucleotide Sequence CTGGTCATCCCCCCAAATACCAGGGCGGAAGGCTACAGTGGATTCTGCCTCACCTCTGCTCAAAACTGGAACTCAGCATTCCCTGGAGGGGGAGGGTGTAGGGTTTCTGGTTCCCAGACAGGATCCTGGCCATACAAGAAT
CircID chr14:90407047|90407202
ORF Type ORF3
Protein Length 27
Nucleotide Length 84
Protein Sequence MARILSGNQKPYTLPLQGMLSSSFEQR
Nucleotide Sequence ATGGCCAGGATCCTGTCTGGGAACCAGAAACCCTACACCCTCCCCCTCCAGGGAATGCTGAGTTCCAGTTTTGAGCAGAGGTGA
CircID chr14:90407047|90407202
ORF Type ORF4
Protein Length 25
Nucleotide Length 75
Protein Sequence MSRGEAESTVAFRPGIWGDDQPRRW
Nucleotide Sequence TTGAGCAGAGGTGAGGCAGAATCCACTGTAGCCTTCCGCCCTGGTATTTGGGGGGATGACCAGCCCAGGCGTTGG
CircID chr14:90407047|90407202
ORF Type ORF5
Protein Length 25
Nucleotide Length 78
Protein Sequence MYGQDPVWEPETLHPPPPGNAEFQF
Nucleotide Sequence TTGTATGGCCAGGATCCTGTCTGGGAACCAGAAACCCTACACCCTCCCCCTCCAGGGAATGCTGAGTTCCAGTTTTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab