CircRNA Information

General Information
circRNA Basic Information
CircID chr14:92940413|92940590
Strand +
CircType exon
Host Gene ENSG00000100605.15;
Algorism CIRI2;
Sequence ACCATGGAGATCGGGGCCCTCTTCCCAGTGGGTTCACTCCTTTTCACACCTGCTGGGTCCCTCCTCACCCAGCAGGCCTGGTCCACCTCTCATTGCAAGCCCCAAGCACTGAGCCAGCAGGTGCCAGGGAGCCACCCGCCCCCCATCGCTTCTGCACACCTCAGACTCACCCCATCAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr14:92940413|92940590 hsa-miR-148a-5p 0 0 1
chr14:92940413|92940590 hsa-miR-148a-3p 0 0 1
chr14:92940413|92940590 hsa-miR-214-5p 0 0 1
chr14:92940413|92940590 hsa-miR-214-3p 0 0 1
chr14:92940413|92940590 hsa-miR-152-5p 0 0 1
chr14:92940413|92940590 hsa-miR-152-3p 0 0 1
chr14:92940413|92940590 hsa-miR-136-5p 0 0 1
chr14:92940413|92940590 hsa-miR-136-3p 0 0 1
chr14:92940413|92940590 hsa-miR-149-5p 0 0 1
chr14:92940413|92940590 hsa-miR-149-3p 0 0 1
chr14:92940413|92940590 hsa-miR-370-5p 0 0 1
chr14:92940413|92940590 hsa-miR-370-3p 0 0 1
chr14:92940413|92940590 hsa-miR-148b-5p 0 0 1
chr14:92940413|92940590 hsa-miR-148b-3p 0 0 1
chr14:92940413|92940590 hsa-miR-520f-5p 0 0 1
chr14:92940413|92940590 hsa-miR-520f-3p 0 0 1
chr14:92940413|92940590 hsa-miR-608 1 0 1
chr14:92940413|92940590 hsa-miR-627-5p 0 0 1
chr14:92940413|92940590 hsa-miR-627-3p 0 0 1
chr14:92940413|92940590 hsa-miR-636 0 0 1
chr14:92940413|92940590 hsa-miR-298 1 0 1
chr14:92940413|92940590 hsa-miR-924 0 0 1
chr14:92940413|92940590 hsa-miR-1262 0 0 1
chr14:92940413|92940590 hsa-miR-296-5p 0 0 1
chr14:92940413|92940590 hsa-miR-342-5p 0 0 1
chr14:92940413|92940590 hsa-miR-24 0 0 1
chr14:92940413|92940590 hsa-miR-886-3p 0 0 1
chr14:92940413|92940590 hsa-miR-637 1 0 0
chr14:92940413|92940590 hsa-miR-648 1 0 0
chr14:92940413|92940590 hsa-miR-3170 1 0 0
chr14:92940413|92940590 hsa-miR-4322 1 0 0
chr14:92940413|92940590 hsa-miR-3665 1 0 0
chr14:92940413|92940590 hsa-miR-3936 1 0 0
chr14:92940413|92940590 hsa-miR-3135b 1 0 0
chr14:92940413|92940590 hsa-miR-4488 1 0 0
chr14:92940413|92940590 hsa-miR-4489 1 0 0
chr14:92940413|92940590 hsa-miR-4651 1 0 0
chr14:92940413|92940590 hsa-miR-4656 1 0 0
chr14:92940413|92940590 hsa-miR-4710 1 0 0
chr14:92940413|92940590 hsa-miR-5572 1 0 0
chr14:92940413|92940590 hsa-miR-6165 1 0 0
chr14:92940413|92940590 hsa-miR-12119 1 0 0
chr14:92940413|92940590 hsa-miR-143-5p 1 0 0
chr14:92940413|92940590 hsa-miR-4731-5p 1 0 0
chr14:92940413|92940590 hsa-miR-1273h-3p 1 0 0
chr14:92940413|92940590 hsa-miR-6747-5p 1 0 0
chr14:92940413|92940590 hsa-miR-6765-5p 1 0 0
chr14:92940413|92940590 hsa-miR-6857-5p 1 0 0
chr14:92940413|92940590 hsa-miR-27a-5p 1 0 0
chr14:92940413|92940590 hsa-miR-8071 1 0 0
chr14:92940413|92940590 hsa-miR-7847-3p 1 0 0
chr14:92940413|92940590 hsa-miR-6742-5p 1 0 0
chr14:92940413|92940590 hsa-miR-3180-3p 1 0 0
chr14:92940413|92940590 hsa-miR-6796-5p 1 0 0
chr14:92940413|92940590 hsa-miR-6732-5p 1 0 0
chr14:92940413|92940590 hsa-miR-2467-3p 1 0 0
chr14:92940413|92940590 hsa-miR-6782-5p 1 0 0
chr14:92940413|92940590 hsa-miR-6850-5p 1 0 0
chr14:92940413|92940590 hsa-miR-3934-3p 1 0 0
chr14:92940413|92940590 hsa-miR-6786-5p 1 0 0
chr14:92940413|92940590 hsa-miR-6740-5p 1 0 0
chr14:92940413|92940590 hsa-miR-6784-5p 1 0 0
chr14:92940413|92940590 hsa-miR-6749-5p 1 0 0
chr14:92940413|92940590 hsa-miR-7854-3p 1 0 0
chr14:92940413|92940590 hsa-miR-4787-5p 1 0 0
chr14:92940413|92940590 hsa-miR-937-5p 1 0 0
chr14:92940413|92940590 hsa-miR-7162-3p 1 0 0
chr14:92940413|92940590 hsa-miR-3619-3p 1 0 0
chr14:92940413|92940590 hsa-miR-10400-5p 1 0 0
chr14:92940413|92940590 hsa-miR-6769b-5p 1 0 0
chr14:92940413|92940590 hsa-miR-6812-5p 1 0 0
chr14:92940413|92940590 hsa-miR-6816-5p 1 0 0
chr14:92940413|92940590 hsa-miR-6865-5p 1 0 0
chr14:92940413|92940590 hsa-miR-1343-5p 1 0 0
chr14:92940413|92940590 hsa-miR-6737-5p 1 0 0
chr14:92940413|92940590 hsa-miR-6752-5p 1 0 0
chr14:92940413|92940590 hsa-miR-6756-5p 1 0 0
chr14:92940413|92940590 hsa-miR-6803-5p 1 0 0
chr14:92940413|92940590 hsa-miR-6819-5p 1 0 0
chr14:92940413|92940590 hsa-miR-6751-5p 1 0 0
chr14:92940413|92940590 hsa-miR-6774-5p 1 0 0
chr14:92940413|92940590 hsa-miR-1237-5p 1 0 0
chr14:92940413|92940590 hsa-miR-328-5p 1 0 0
chr14:92940413|92940590 hsa-miR-6848-5p 1 0 0
chr14:92940413|92940590 hsa-miR-6858-5p 1 0 0
chr14:92940413|92940590 hsa-miR-6855-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr14:92940413|92940590
ORF Type ORF1
Protein Length 58
Nucleotide Length 174
Protein Sequence MEIGALFPVGSLLFTPAGSLLTQQAWSTSHCKPQALSQQVPGSHPPPIASAHLRLTPS
Nucleotide Sequence ATGGAGATCGGGGCCCTCTTCCCAGTGGGTTCACTCCTTTTCACACCTGCTGGGTCCCTCCTCACCCAGCAGGCCTGGTCCACCTCTCATTGCAAGCCCCAAGCACTGAGCCAGCAGGTGCCAGGGAGCCACCCGCCCCCCATCGCTTCTGCACACCTCAGACTCACCCCATCA
CircID chr14:92940413|92940590
ORF Type ORF2
Protein Length 33
Nucleotide Length 99
Protein Sequence MVHLSLQAPSTEPAGAREPPAPHRFCTPQTHPI
Nucleotide Sequence CTGGTCCACCTCTCATTGCAAGCCCCAAGCACTGAGCCAGCAGGTGCCAGGGAGCCACCCGCCCCCCATCGCTTCTGCACACCTCAGACTCACCCCATC
CircID chr14:92940413|92940590
ORF Type ORF3
Protein Length 28
Nucleotide Length 87
Protein Sequence MLAQCLGLAMRGGPGLLGEEGPSRCEKE
Nucleotide Sequence CTGCTGGCTCAGTGCTTGGGGCTTGCAATGAGAGGTGGACCAGGCCTGCTGGGTGAGGAGGGACCCAGCAGGTGTGAAAAGGAGTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab