CircRNA Information

General Information
circRNA Basic Information
CircID chr14:96530330|96530546
Strand -
CircType exon
Host Gene
Algorism CIRI2;
Sequence CAGGTATTTGTACATTTCCATTTCTGTTTTAAAAATATTGCCATGTTTGTTTGTTTTTTTTTTTCTTTTTTTTTTTTCTGAGGCAGGGTCTTACTTTACCCAGGCTAGAGGCAGTGTTGCAATCACAGTTCACTGTAGCCTCAACCTCCTGGGCTCAAGGGATCCTCCTACCTCAGCCCCCCCAAGTAGGTGGGACTACAGGCGCTTGTCACCATGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr14:96530330|96530546 hsa-let-7b-5p 0 0 1
chr14:96530330|96530546 hsa-let-7b-3p 0 0 1
chr14:96530330|96530546 hsa-let-7c-5p 0 0 1
chr14:96530330|96530546 hsa-let-7c-3p 0 0 1
chr14:96530330|96530546 hsa-let-7d-5p 0 0 1
chr14:96530330|96530546 hsa-let-7d-3p 0 0 1
chr14:96530330|96530546 hsa-let-7e-5p 0 0 1
chr14:96530330|96530546 hsa-let-7e-3p 0 0 1
chr14:96530330|96530546 hsa-miR-98-5p 0 0 1
chr14:96530330|96530546 hsa-miR-98-3p 0 0 1
chr14:96530330|96530546 hsa-let-7g-5p 0 0 1
chr14:96530330|96530546 hsa-let-7g-3p 0 0 1
chr14:96530330|96530546 hsa-let-7i-5p 0 0 1
chr14:96530330|96530546 hsa-let-7i-3p 0 0 1
chr14:96530330|96530546 hsa-miR-141-5p 0 0 1
chr14:96530330|96530546 hsa-miR-141-3p 0 0 1
chr14:96530330|96530546 hsa-miR-200a-5p 0 0 1
chr14:96530330|96530546 hsa-miR-200a-3p 0 0 1
chr14:96530330|96530546 hsa-miR-202-5p 0 0 1
chr14:96530330|96530546 hsa-miR-202-3p 0 0 1
chr14:96530330|96530546 hsa-miR-495-5p 0 0 1
chr14:96530330|96530546 hsa-miR-495-3p 0 0 1
chr14:96530330|96530546 hsa-miR-504-5p 0 0 1
chr14:96530330|96530546 hsa-miR-504-3p 0 0 1
chr14:96530330|96530546 hsa-miR-555 0 0 1
chr14:96530330|96530546 hsa-miR-559 0 0 1
chr14:96530330|96530546 hsa-miR-596 0 0 1
chr14:96530330|96530546 hsa-miR-623 0 1 1
chr14:96530330|96530546 hsa-miR-661 0 0 1
chr14:96530330|96530546 hsa-miR-890 0 0 1
chr14:96530330|96530546 hsa-miR-665 0 1 1
chr14:96530330|96530546 hsa-miR-548j-5p 0 0 1
chr14:96530330|96530546 hsa-miR-548j-3p 0 0 1
chr14:96530330|96530546 hsa-miR-548k 0 0 1
chr14:96530330|96530546 hsa-miR-548l 0 0 1
chr14:96530330|96530546 hsa-miR-1304-5p 0 0 1
chr14:96530330|96530546 hsa-miR-1304-3p 0 0 1
chr14:96530330|96530546 hsa-miR-1251-5p 0 0 1
chr14:96530330|96530546 hsa-miR-1251-3p 0 0 1
chr14:96530330|96530546 hsa-miR-1275 0 0 1
chr14:96530330|96530546 hsa-miR-139-5p 0 1 1
chr14:96530330|96530546 hsa-miR-1225-3p 0 0 1
chr14:96530330|96530546 hsa-miR-485-5p 0 0 1
chr14:96530330|96530546 hsa-miR-1224-3p 0 0 1
chr14:96530330|96530546 hsa-miR-188-5p 0 1 1
chr14:96530330|96530546 hsa-miR-548b-5p 0 0 1
chr14:96530330|96530546 hsa-miR-548d-5p 0 0 1
chr14:96530330|96530546 hsa-miR-548c-5p 0 0 1
chr14:96530330|96530546 hsa-miR-548a-5p 0 0 1
chr14:96530330|96530546 hsa-miR-548i 0 0 1
chr14:96530330|96530546 hsa-miR-1260 0 0 1
chr14:96530330|96530546 hsa-miR-1280 0 0 1
chr14:96530330|96530546 hsa-miR-1233 0 0 1
chr14:96530330|96530546 hsa-let-7a 0 0 1
chr14:96530330|96530546 hsa-let-7f 0 0 1
chr14:96530330|96530546 hsa-miR-548h 0 0 1
chr14:96530330|96530546 hsa-miR-663a 1 0 0
chr14:96530330|96530546 hsa-miR-762 1 0 0
chr14:96530330|96530546 hsa-miR-3132 1 0 0
chr14:96530330|96530546 hsa-miR-4500 0 1 0
chr14:96530330|96530546 hsa-miR-4522 1 0 0
chr14:96530330|96530546 hsa-miR-4656 1 1 0
chr14:96530330|96530546 hsa-miR-4739 1 0 0
chr14:96530330|96530546 hsa-miR-4741 1 0 0
chr14:96530330|96530546 hsa-miR-4780 0 1 0
chr14:96530330|96530546 hsa-miR-5787 1 0 0
chr14:96530330|96530546 hsa-miR-6085 1 0 0
chr14:96530330|96530546 hsa-miR-7706 0 1 0
chr14:96530330|96530546 hsa-miR-8070 0 1 0
chr14:96530330|96530546 hsa-miR-6840-3p 0 1 0
chr14:96530330|96530546 hsa-miR-6765-5p 1 0 0
chr14:96530330|96530546 hsa-miR-6861-5p 0 1 0
chr14:96530330|96530546 hsa-miR-7160-5p 0 1 0
chr14:96530330|96530546 hsa-miR-203b-3p 0 1 0
chr14:96530330|96530546 hsa-miR-3667-5p 0 1 0
chr14:96530330|96530546 hsa-miR-7109-5p 1 0 0
chr14:96530330|96530546 hsa-let-7a-5p 0 1 0
chr14:96530330|96530546 hsa-miR-4661-3p 0 1 0
chr14:96530330|96530546 hsa-miR-3664-3p 0 1 0
chr14:96530330|96530546 hsa-miR-6890-3p 0 1 0
chr14:96530330|96530546 hsa-miR-6778-5p 1 0 0
chr14:96530330|96530546 hsa-miR-6787-5p 1 0 0
chr14:96530330|96530546 hsa-miR-6737-5p 1 0 0
chr14:96530330|96530546 hsa-miR-6756-5p 1 0 0
chr14:96530330|96530546 hsa-miR-6803-5p 1 0 0
chr14:96530330|96530546 hsa-miR-6813-5p 1 0 0
chr14:96530330|96530546 hsa-miR-6819-5p 1 0 0
chr14:96530330|96530546 hsa-miR-6774-5p 1 0 0
chr14:96530330|96530546 hsa-miR-10396b-5p 1 0 0
chr14:96530330|96530546 hsa-miR-328-5p 1 1 0
chr14:96530330|96530546 hsa-miR-6795-5p 1 0 0
chr14:96530330|96530546 hsa-miR-6846-5p 1 1 0
chr14:96530330|96530546 hsa-miR-6848-5p 1 1 0
chr14:96530330|96530546 hsa-miR-6887-5p 1 0 0
chr14:96530330|96530546 hsa-miR-939-5p 1 0 0
chr14:96530330|96530546 hsa-miR-377-5p 0 1 0
chr14:96530330|96530546 hsa-miR-6775-3p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr14:96530330|96530546
ORF Type ORF1
Protein Length 70
Nucleotide Length 210
Protein Sequence MYISISVLKILPCLFVFFFLFFFSEAGSYFTQARGSVAITVHCSLNLLGSRDPPTSAPPSRWDYRRLSPC
Nucleotide Sequence TTGTACATTTCCATTTCTGTTTTAAAAATATTGCCATGTTTGTTTGTTTTTTTTTTTCTTTTTTTTTTTTCTGAGGCAGGGTCTTACTTTACCCAGGCTAGAGGCAGTGTTGCAATCACAGTTCACTGTAGCCTCAACCTCCTGGGCTCAAGGGATCCTCCTACCTCAGCCCCCCCAAGTAGGTGGGACTACAGGCGCTTGTCACCATGC
CircID chr14:96530330|96530546
ORF Type ORF2
Protein Length 55
Nucleotide Length 165
Protein Sequence MFFFFFFFFLRQGLTLPRLEAVLQSQFTVASTSWAQGILLPQPPQVGGTTGACHH
Nucleotide Sequence TTGTTTTTTTTTTTCTTTTTTTTTTTTCTGAGGCAGGGTCTTACTTTACCCAGGCTAGAGGCAGTGTTGCAATCACAGTTCACTGTAGCCTCAACCTCCTGGGCTCAAGGGATCCTCCTACCTCAGCCCCCCCAAGTAGGTGGGACTACAGGCGCTTGTCACCAT
CircID chr14:96530330|96530546
ORF Type ORF3
Protein Length 28
Nucleotide Length 84
Protein Sequence MPQKKKKEKKKQTNMAIFLKQKWKCTNT
Nucleotide Sequence CTGCCTCAGAAAAAAAAAAAAGAAAAAAAAAAACAAACAAACATGGCAATATTTTTAAAACAGAAATGGAAATGTACAAATACC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab