CircRNA Information

General Information
circRNA Basic Information
CircID chr14:99528460|99528728
Strand +
CircType exon
Host Gene
Algorism CIRI2;
Sequence CTTGCAGGTCATCTTTGCCTTGAGGCTAGAACAGGGGGCCAGATAGGGCGTGCATCCCCCACCTGGCCTCTCTGAGCTGCTGGGATCTTGGGGTGCCTCTAGGCCGGGGCACCCCATCCCAGGGCTTCTCAAAGGTTTGCTTTTCCCTGGGAGGGTAGCAGGGCACTTGGGGTGGCTCCACCCTGGTGTGAGTTTTGGGGTGGGCTATGGGGGGTGGTGGGTGCTCCTAGGGACCCAGTGCCGGGCACATGGCAGGTCTTCAGTGAGTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr14:99528460|99528728 hsa-miR-580-5p 0 0 1
chr14:99528460|99528728 hsa-miR-580-3p 0 0 1
chr14:99528460|99528728 hsa-miR-608 0 0 1
chr14:99528460|99528728 hsa-miR-625-5p 0 0 1
chr14:99528460|99528728 hsa-miR-625-3p 0 0 1
chr14:99528460|99528728 hsa-miR-631 0 0 1
chr14:99528460|99528728 hsa-miR-646 0 0 1
chr14:99528460|99528728 hsa-miR-1323 0 0 1
chr14:99528460|99528728 hsa-miR-874-5p 0 0 1
chr14:99528460|99528728 hsa-miR-874-3p 0 0 1
chr14:99528460|99528728 hsa-miR-708-5p 0 0 1
chr14:99528460|99528728 hsa-miR-708-3p 0 0 1
chr14:99528460|99528728 hsa-miR-1228-5p 0 0 1
chr14:99528460|99528728 hsa-miR-1228-3p 0 0 1
chr14:99528460|99528728 hsa-miR-1253 0 0 1
chr14:99528460|99528728 hsa-miR-548o-3p 0 0 1
chr14:99528460|99528728 hsa-miR-1275 0 0 1
chr14:99528460|99528728 hsa-miR-548o 0 0 1
chr14:99528460|99528728 hsa-miR-146b-3p 0 0 1
chr14:99528460|99528728 hsa-miR-28-5p 0 0 1
chr14:99528460|99528728 hsa-miR-455-5p 0 0 1
chr14:99528460|99528728 hsa-miR-342-5p 0 0 1
chr14:99528460|99528728 hsa-miR-342-3p 0 0 1
chr14:99528460|99528728 hsa-miR-220b 0 0 1
chr14:99528460|99528728 hsa-miR-1274b 0 0 1
chr14:99528460|99528728 hsa-miR-1300 0 0 1
chr14:99528460|99528728 hsa-miR-220a 0 0 1
chr14:99528460|99528728 hsa-miR-764 0 1 0
chr14:99528460|99528728 hsa-miR-1470 1 0 0
chr14:99528460|99528728 hsa-miR-4254 0 1 0
chr14:99528460|99528728 hsa-miR-4420 0 1 0
chr14:99528460|99528728 hsa-miR-4518 0 1 0
chr14:99528460|99528728 hsa-miR-4525 0 1 0
chr14:99528460|99528728 hsa-miR-4530 0 1 0
chr14:99528460|99528728 hsa-miR-4689 0 1 0
chr14:99528460|99528728 hsa-miR-10226 0 1 0
chr14:99528460|99528728 hsa-miR-197-3p 1 0 0
chr14:99528460|99528728 hsa-miR-4726-3p 0 1 0
chr14:99528460|99528728 hsa-miR-671-5p 0 1 0
chr14:99528460|99528728 hsa-miR-6728-5p 0 1 0
chr14:99528460|99528728 hsa-miR-3663-3p 0 1 0
chr14:99528460|99528728 hsa-miR-6089 1 1 0
chr14:99528460|99528728 hsa-miR-769-5p 1 0 0
chr14:99528460|99528728 hsa-miR-6884-3p 1 0 0
chr14:99528460|99528728 hsa-miR-6753-5p 0 1 0
chr14:99528460|99528728 hsa-miR-1266-3p 0 1 0
chr14:99528460|99528728 hsa-miR-1304-3p 0 1 0
chr14:99528460|99528728 hsa-miR-6789-5p 0 1 0
chr14:99528460|99528728 hsa-miR-4640-3p 0 1 0
chr14:99528460|99528728 hsa-miR-103b 0 1 0
chr14:99528460|99528728 hsa-miR-7106-3p 1 0 0
chr14:99528460|99528728 hsa-miR-6871-3p 0 1 0
chr14:99528460|99528728 hsa-miR-4746-5p 0 1 0
chr14:99528460|99528728 hsa-miR-3620-3p 1 0 0
chr14:99528460|99528728 hsa-miR-1229-3p 1 0 0
chr14:99528460|99528728 hsa-miR-3173-5p 0 1 0
chr14:99528460|99528728 hsa-miR-1287-3p 0 1 0
chr14:99528460|99528728 hsa-miR-6729-3p 1 1 0
chr14:99528460|99528728 hsa-miR-3680-5p 0 1 0
chr14:99528460|99528728 hsa-miR-6812-5p 0 1 0
chr14:99528460|99528728 hsa-miR-6737-5p 0 1 0
chr14:99528460|99528728 hsa-miR-6754-5p 0 1 0
chr14:99528460|99528728 hsa-miR-6819-5p 0 1 0
chr14:99528460|99528728 hsa-miR-1915-3p 0 1 0
chr14:99528460|99528728 hsa-miR-4685-5p 1 0 0
chr14:99528460|99528728 hsa-miR-6856-5p 0 1 0
chr14:99528460|99528728 hsa-miR-6799-3p 0 1 0
chr14:99528460|99528728 hsa-miR-4664-5p 0 1 0
chr14:99528460|99528728 hsa-miR-4665-5p 0 1 0
chr14:99528460|99528728 hsa-miR-4472 0 1 0
chr14:99528460|99528728 hsa-miR-6791-5p 0 1 0
chr14:99528460|99528728 hsa-miR-6727-3p 0 1 0
chr14:99528460|99528728 hsa-miR-6511a-3p 1 1 0
chr14:99528460|99528728 hsa-miR-6805-3p 0 1 0
chr14:99528460|99528728 hsa-miR-6511b-3p 1 1 0
chr14:99528460|99528728 hsa-miR-7114-3p 1 0 0
chr14:99528460|99528728 hsa-miR-4769-3p 0 1 0
chr14:99528460|99528728 hsa-miR-6733-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr14:99528460|99528728
ORF Type ORF1
Protein Length 64
Nucleotide Length 192
Protein Sequence MLGSWGASRPGHPIPGLLKGLLFPGRVAGHLGWLHPGVSFGVGYGGWWVLLGTQCRAHGRSSVS
Nucleotide Sequence CTGCTGGGATCTTGGGGTGCCTCTAGGCCGGGGCACCCCATCCCAGGGCTTCTCAAAGGTTTGCTTTTCCCTGGGAGGGTAGCAGGGCACTTGGGGTGGCTCCACCCTGGTGTGAGTTTTGGGGTGGGCTATGGGGGGTGGTGGGTGCTCCTAGGGACCCAGTGCCGGGCACATGGCAGGTCTTCAGTGAGT
CircID chr14:99528460|99528728
ORF Type ORF2
Protein Length 31
Nucleotide Length 96
Protein Sequence MASLSCWDLGVPLGRGTPSQGFSKVCFSLGG
Nucleotide Sequence CTGGCCTCTCTGAGCTGCTGGGATCTTGGGGTGCCTCTAGGCCGGGGCACCCCATCCCAGGGCTTCTCAAAGGTTTGCTTTTCCCTGGGAGGGTAG
CircID chr14:99528460|99528728
ORF Type ORF3
Protein Length 44
Nucleotide Length 135
Protein Sequence MKTCHVPGTGSLGAPTTPHSPPQNSHQGGATPSALLPSQGKANL
Nucleotide Sequence CTGAAGACCTGCCATGTGCCCGGCACTGGGTCCCTAGGAGCACCCACCACCCCCCATAGCCCACCCCAAAACTCACACCAGGGTGGAGCCACCCCAAGTGCCCTGCTACCCTCCCAGGGAAAAGCAAACCTTTGA
CircID chr14:99528460|99528728
ORF Type ORF4
Protein Length 44
Nucleotide Length 132
Protein Sequence MRSPGMGCPGLEAPQDPSSSERPGGGCTPYLAPCSSLKAKMTCK
Nucleotide Sequence TTGAGAAGCCCTGGGATGGGGTGCCCCGGCCTAGAGGCACCCCAAGATCCCAGCAGCTCAGAGAGGCCAGGTGGGGGATGCACGCCCTATCTGGCCCCCTGTTCTAGCCTCAAGGCAAAGATGACCTGCAAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab