CircRNA Information

General Information
circRNA Basic Information
CircID chr15:100330889|100334180
Strand -
CircType exon
Host Gene ENSG00000140470.12;
Algorism CIRI2;
Sequence CTGTTAGAACCTTGCAGAGCTGCTCAGGTCTCTGGGCCTCAGCAGAAGGGCTGGGGGTCAAGGACCATTTGCGCCTGATCAGATGTTCTCGTCCACTGAATGGGCCCTGGGAGTTGTTGAGGGGCTGGATTAGCACCTGCTCCTGCCCAAGCTGAATGAGGCCAACCTTTCAACTCTCTTTGTTGTGGGTACTTGCTTTGAAGGGTTCTATTAAGACAGAGTTGTAAATCAGGCATTGTTCACGCCACACCACCTCGTGCCTGAAGCAGGACGAGCTCTCA
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr15:100330889|100334180 hsa-miR-370-5p 0 0 1
chr15:100330889|100334180 hsa-miR-370-3p 0 0 1
chr15:100330889|100334180 hsa-miR-383-5p 0 0 1
chr15:100330889|100334180 hsa-miR-383-3p 0 0 1
chr15:100330889|100334180 hsa-miR-488-5p 0 0 1
chr15:100330889|100334180 hsa-miR-488-3p 0 0 1
chr15:100330889|100334180 hsa-miR-522-5p 0 0 1
chr15:100330889|100334180 hsa-miR-522-3p 0 0 1
chr15:100330889|100334180 hsa-miR-633 0 0 1
chr15:100330889|100334180 hsa-miR-635 0 0 1
chr15:100330889|100334180 hsa-miR-646 0 0 1
chr15:100330889|100334180 hsa-miR-1237-5p 0 0 1
chr15:100330889|100334180 hsa-miR-1237-3p 0 0 1
chr15:100330889|100334180 hsa-miR-769-5p 0 1 1
chr15:100330889|100334180 hsa-miR-330-3p 0 1 1
chr15:100330889|100334180 hsa-miR-361-3p 0 1 1
chr15:100330889|100334180 hsa-miR-644 0 0 1
chr15:100330889|100334180 hsa-miR-129-3p 0 0 1
chr15:100330889|100334180 hsa-miR-1201 0 0 1
chr15:100330889|100334180 hsa-miR-219-1-3p 0 0 1
chr15:100330889|100334180 hsa-miR-608 1 1 0
chr15:100330889|100334180 hsa-miR-612 1 0 0
chr15:100330889|100334180 hsa-miR-764 0 1 0
chr15:100330889|100334180 hsa-miR-3147 1 1 0
chr15:100330889|100334180 hsa-miR-3907 1 0 0
chr15:100330889|100334180 hsa-miR-4453 0 1 0
chr15:100330889|100334180 hsa-miR-4538 0 1 0
chr15:100330889|100334180 hsa-miR-4660 0 1 0
chr15:100330889|100334180 hsa-miR-4721 1 0 0
chr15:100330889|100334180 hsa-miR-4767 1 0 0
chr15:100330889|100334180 hsa-miR-5787 1 0 0
chr15:100330889|100334180 hsa-miR-6071 0 1 0
chr15:100330889|100334180 hsa-miR-6081 1 1 0
chr15:100330889|100334180 hsa-miR-6134 0 1 0
chr15:100330889|100334180 hsa-miR-6860 1 1 0
chr15:100330889|100334180 hsa-miR-93-3p 0 1 0
chr15:100330889|100334180 hsa-miR-323a-5p 1 0 0
chr15:100330889|100334180 hsa-miR-6861-5p 1 0 0
chr15:100330889|100334180 hsa-miR-6825-5p 1 0 0
chr15:100330889|100334180 hsa-miR-766-3p 1 1 0
chr15:100330889|100334180 hsa-miR-3622a-5p 0 1 0
chr15:100330889|100334180 hsa-miR-7160-5p 0 1 0
chr15:100330889|100334180 hsa-miR-6721-5p 0 1 0
chr15:100330889|100334180 hsa-miR-5088-5p 1 0 0
chr15:100330889|100334180 hsa-miR-1228-5p 1 1 0
chr15:100330889|100334180 hsa-miR-6769a-3p 0 1 0
chr15:100330889|100334180 hsa-miR-7112-5p 1 0 0
chr15:100330889|100334180 hsa-miR-4750-5p 0 1 0
chr15:100330889|100334180 hsa-miR-5088-3p 0 1 0
chr15:100330889|100334180 hsa-miR-4749-3p 0 1 0
chr15:100330889|100334180 hsa-miR-6859-3p 0 1 0
chr15:100330889|100334180 hsa-miR-4772-5p 0 1 0
chr15:100330889|100334180 hsa-miR-3664-5p 0 1 0
chr15:100330889|100334180 hsa-miR-5003-5p 0 1 0
chr15:100330889|100334180 hsa-miR-4763-3p 1 1 0
chr15:100330889|100334180 hsa-miR-6816-5p 1 0 0
chr15:100330889|100334180 hsa-miR-7107-5p 1 0 0
chr15:100330889|100334180 hsa-miR-6774-5p 1 1 0
chr15:100330889|100334180 hsa-miR-3620-5p 1 0 0
chr15:100330889|100334180 hsa-miR-1909-3p 0 1 0
chr15:100330889|100334180 hsa-miR-4649-5p 1 0 0
chr15:100330889|100334180 hsa-miR-4685-5p 0 1 0
chr15:100330889|100334180 hsa-miR-6729-5p 1 1 0
chr15:100330889|100334180 hsa-miR-675-5p 1 0 0
chr15:100330889|100334180 hsa-miR-10398-3p 0 1 0
chr15:100330889|100334180 hsa-miR-6837-5p 0 1 0
chr15:100330889|100334180 hsa-miR-6512-3p 0 1 0
chr15:100330889|100334180 hsa-miR-10397-5p 0 1 0
chr15:100330889|100334180 hsa-miR-6764-5p 0 1 0
chr15:100330889|100334180 hsa-miR-4690-3p 1 0 0
chr15:100330889|100334180 hsa-miR-128-2-5p 1 0 0
chr15:100330889|100334180 hsa-miR-6715b-5p 1 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr15:100330889|100334180
ORF Type ORF1
Protein Length 25
Nucleotide Length 78
Protein Sequence LLEPCRAAQVSGPQQKGWGSRTICA
Nucleotide Sequence CTGTTAGAACCTTGCAGAGCTGCTCAGGTCTCTGGGCCTCAGCAGAAGGGCTGGGGGTCAAGGACCATTTGCGCCTGA
CircID chr15:100330889|100334180
ORF Type ORF2
Protein Length 37
Nucleotide Length 114
Protein Sequence MLRSLGLSRRAGGQGPFAPDQMFSSTEWALGVVEGLD
Nucleotide Sequence CTGCTCAGGTCTCTGGGCCTCAGCAGAAGGGCTGGGGGTCAAGGACCATTTGCGCCTGATCAGATGTTCTCGTCCACTGAATGGGCCCTGGGAGTTGTTGAGGGGCTGGATTAG
CircID chr15:100330889|100334180
ORF Type ORF3
Protein Length 25
Nucleotide Length 78
Protein Sequence MLLPKLNEANLSTLFVVGTCFEGFY
Nucleotide Sequence CTGCTCCTGCCCAAGCTGAATGAGGCCAACCTTTCAACTCTCTTTGTTGTGGGTACTTGCTTTGAAGGGTTCTATTAA
CircID chr15:100330889|100334180
ORF Type ORF4
Protein Length 47
Nucleotide Length 144
Protein Sequence MQSCSGLWASAEGLGVKDHLRLIRCSRPLNGPWELLRGWISTCSCPS
Nucleotide Sequence TTGCAGAGCTGCTCAGGTCTCTGGGCCTCAGCAGAAGGGCTGGGGGTCAAGGACCATTTGCGCCTGATCAGATGTTCTCGTCCACTGAATGGGCCCTGGGAGTTGTTGAGGGGCTGGATTAGCACCTGCTCCTGCCCAAGCTGA
CircID chr15:100330889|100334180
ORF Type ORF5
Protein Length 65
Nucleotide Length 198
Protein Sequence MPDLQLCLNRTLQSKYPQQRELKGWPHSAWAGAGANPAPQQLPGPIQWTRTSDQAQMVLDPQPFC
Nucleotide Sequence ATGCCTGATTTACAACTCTGTCTTAATAGAACCCTTCAAAGCAAGTACCCACAACAAAGAGAGTTGAAAGGTTGGCCTCATTCAGCTTGGGCAGGAGCAGGTGCTAATCCAGCCCCTCAACAACTCCCAGGGCCCATTCAGTGGACGAGAACATCTGATCAGGCGCAAATGGTCCTTGACCCCCAGCCCTTCTGCTGA
CircID chr15:100330889|100334180
ORF Type ORF6
Protein Length 27
Nucleotide Length 81
Protein Sequence MIRRKWSLTPSPSAEAQRPEQLCKVLT
Nucleotide Sequence CTGATCAGGCGCAAATGGTCCTTGACCCCCAGCCCTTCTGCTGAGGCCCAGAGACCTGAGCAGCTCTGCAAGGTTCTAACA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab