CircRNA Information

General Information
circRNA Basic Information
CircID chr15:25860053|25860189
Strand -
CircType exon
Host Gene
Algorism CIRI2;
Sequence CAAACGCACTGCACAGACCTTGGCCTGACACAGAAGTCATTTCCTTGGCTGCTCTGTGCTGTCTGGGTGCCAGGTCCTGAGAGCCAGGGCTTCATGTCGATGCTTCACCCCAGTGTACCCTAGAACCTGTTCTCAAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr15:25860053|25860189 hsa-miR-146a-5p 0 0 1
chr15:25860053|25860189 hsa-miR-146a-3p 0 0 1
chr15:25860053|25860189 hsa-miR-149-5p 0 0 1
chr15:25860053|25860189 hsa-miR-149-3p 0 0 1
chr15:25860053|25860189 hsa-miR-492 0 0 1
chr15:25860053|25860189 hsa-miR-580-5p 0 0 1
chr15:25860053|25860189 hsa-miR-580-3p 0 0 1
chr15:25860053|25860189 hsa-miR-589-5p 0 0 1
chr15:25860053|25860189 hsa-miR-589-3p 0 0 1
chr15:25860053|25860189 hsa-miR-592 0 0 1
chr15:25860053|25860189 hsa-miR-597-5p 0 0 1
chr15:25860053|25860189 hsa-miR-597-3p 0 0 1
chr15:25860053|25860189 hsa-miR-608 1 0 1
chr15:25860053|25860189 hsa-miR-617 0 0 1
chr15:25860053|25860189 hsa-miR-631 0 1 1
chr15:25860053|25860189 hsa-miR-760 1 0 1
chr15:25860053|25860189 hsa-miR-1266-5p 0 0 1
chr15:25860053|25860189 hsa-miR-1266-3p 0 0 1
chr15:25860053|25860189 hsa-miR-1324 0 0 1
chr15:25860053|25860189 hsa-miR-342-5p 0 0 1
chr15:25860053|25860189 hsa-miR-146b-5p 0 0 1
chr15:25860053|25860189 hsa-miR-1300 0 0 1
chr15:25860053|25860189 hsa-miR-637 1 0 0
chr15:25860053|25860189 hsa-miR-1263 0 1 0
chr15:25860053|25860189 hsa-miR-3661 1 1 0
chr15:25860053|25860189 hsa-miR-4463 1 0 0
chr15:25860053|25860189 hsa-miR-4651 1 0 0
chr15:25860053|25860189 hsa-miR-5093 0 1 0
chr15:25860053|25860189 hsa-miR-5572 1 0 0
chr15:25860053|25860189 hsa-miR-8060 0 1 0
chr15:25860053|25860189 hsa-miR-8073 0 1 0
chr15:25860053|25860189 hsa-miR-8089 1 0 0
chr15:25860053|25860189 hsa-miR-143-5p 0 1 0
chr15:25860053|25860189 hsa-miR-152-5p 0 1 0
chr15:25860053|25860189 hsa-miR-500b-3p 0 1 0
chr15:25860053|25860189 hsa-miR-671-5p 1 0 0
chr15:25860053|25860189 hsa-miR-1972 0 1 0
chr15:25860053|25860189 hsa-miR-874-3p 1 1 0
chr15:25860053|25860189 hsa-miR-6742-5p 1 0 0
chr15:25860053|25860189 hsa-miR-3180-3p 1 0 0
chr15:25860053|25860189 hsa-miR-6796-5p 1 0 0
chr15:25860053|25860189 hsa-miR-1343-3p 1 0 0
chr15:25860053|25860189 hsa-miR-6852-5p 1 0 0
chr15:25860053|25860189 hsa-miR-7109-5p 1 0 0
chr15:25860053|25860189 hsa-miR-4787-5p 1 0 0
chr15:25860053|25860189 hsa-miR-7843-3p 0 1 0
chr15:25860053|25860189 hsa-miR-6501-3p 0 1 0
chr15:25860053|25860189 hsa-miR-3126-3p 0 1 0
chr15:25860053|25860189 hsa-miR-6779-3p 0 1 0
chr15:25860053|25860189 hsa-miR-221-5p 0 1 0
chr15:25860053|25860189 hsa-miR-6812-5p 1 1 0
chr15:25860053|25860189 hsa-miR-6737-5p 1 0 0
chr15:25860053|25860189 hsa-miR-6803-5p 1 0 0
chr15:25860053|25860189 hsa-miR-6819-5p 1 1 0
chr15:25860053|25860189 hsa-miR-6751-5p 1 0 0
chr15:25860053|25860189 hsa-miR-4649-5p 1 0 0
chr15:25860053|25860189 hsa-miR-6855-5p 1 0 0
chr15:25860053|25860189 hsa-miR-6750-5p 1 0 0
chr15:25860053|25860189 hsa-miR-1271-5p 0 1 0
chr15:25860053|25860189 hsa-miR-1912-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr15:25860053|25860189
ORF Type ORF1
Protein Length 32
Nucleotide Length 99
Protein Sequence MTQKSFPWLLCAVWVPGPESQGFMSMLHPSVP
Nucleotide Sequence CTGACACAGAAGTCATTTCCTTGGCTGCTCTGTGCTGTCTGGGTGCCAGGTCCTGAGAGCCAGGGCTTCATGTCGATGCTTCACCCCAGTGTACCCTAG
CircID chr15:25860053|25860189
ORF Type ORF2
Protein Length 26
Nucleotide Length 78
Protein Sequence MSGCQVLRARASCRCFTPVYPRTCSQ
Nucleotide Sequence CTGTCTGGGTGCCAGGTCCTGAGAGCCAGGGCTTCATGTCGATGCTTCACCCCAGTGTACCCTAGAACCTGTTCTCAA
CircID chr15:25860053|25860189
ORF Type ORF3
Protein Length 31
Nucleotide Length 93
Protein Sequence MKPWLSGPGTQTAQSSQGNDFCVRPRSVQCV
Nucleotide Sequence ATGAAGCCCTGGCTCTCAGGACCTGGCACCCAGACAGCACAGAGCAGCCAAGGAAATGACTTCTGTGTCAGGCCAAGGTCTGTGCAGTGCGTT
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab