CircRNA Information

General Information
circRNA Basic Information
CircID chr15:38484255|38484372
Strand +
CircType exon
Host Gene ENSG00000171262.10;
Algorism CIRI2;
Sequence CCCAACCACCCCTTCCACCGCCGCCTTCTTGTCTCTTTTGCCAAGGGGGCATTTCTGGAGGTGGTGGTTCAATTTCATTCGGCCGGCCTCCCCTGTCAGGCACCCTTCCCATCAGCAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr15:38484255|38484372 hsa-miR-182-5p 0 0 1
chr15:38484255|38484372 hsa-miR-182-3p 0 0 1
chr15:38484255|38484372 hsa-miR-608 0 1 1
chr15:38484255|38484372 hsa-miR-1293 0 0 1
chr15:38484255|38484372 hsa-miR-876-3p 0 0 1
chr15:38484255|38484372 hsa-miR-220b 0 0 1
chr15:38484255|38484372 hsa-miR-550 0 0 1
chr15:38484255|38484372 hsa-miR-1201 0 0 1
chr15:38484255|38484372 hsa-miR-365 0 0 1
chr15:38484255|38484372 hsa-miR-663a 1 0 0
chr15:38484255|38484372 hsa-miR-940 1 0 0
chr15:38484255|38484372 hsa-miR-3185 0 1 0
chr15:38484255|38484372 hsa-miR-3196 1 0 0
chr15:38484255|38484372 hsa-miR-3612 1 0 0
chr15:38484255|38484372 hsa-miR-3660 0 1 0
chr15:38484255|38484372 hsa-miR-3936 0 1 0
chr15:38484255|38484372 hsa-miR-4428 0 1 0
chr15:38484255|38484372 hsa-miR-4467 0 1 0
chr15:38484255|38484372 hsa-miR-4488 1 0 0
chr15:38484255|38484372 hsa-miR-4526 1 1 0
chr15:38484255|38484372 hsa-miR-3960 1 1 0
chr15:38484255|38484372 hsa-miR-4651 1 0 0
chr15:38484255|38484372 hsa-miR-4673 1 0 0
chr15:38484255|38484372 hsa-miR-6076 1 0 0
chr15:38484255|38484372 hsa-miR-6133 1 0 0
chr15:38484255|38484372 hsa-miR-7150 1 0 0
chr15:38484255|38484372 hsa-miR-8072 0 1 0
chr15:38484255|38484372 hsa-miR-8073 1 0 0
chr15:38484255|38484372 hsa-miR-8075 1 1 0
chr15:38484255|38484372 hsa-miR-9718 1 0 0
chr15:38484255|38484372 hsa-miR-138-5p 1 0 0
chr15:38484255|38484372 hsa-miR-6825-5p 1 1 0
chr15:38484255|38484372 hsa-miR-4708-5p 0 1 0
chr15:38484255|38484372 hsa-miR-6799-5p 1 0 0
chr15:38484255|38484372 hsa-miR-6804-5p 1 1 0
chr15:38484255|38484372 hsa-miR-6089 1 0 0
chr15:38484255|38484372 hsa-miR-3622b-5p 1 0 0
chr15:38484255|38484372 hsa-miR-6721-5p 1 0 0
chr15:38484255|38484372 hsa-miR-4655-5p 1 0 0
chr15:38484255|38484372 hsa-miR-6798-5p 1 0 0
chr15:38484255|38484372 hsa-miR-6782-5p 1 0 0
chr15:38484255|38484372 hsa-miR-5006-5p 1 0 0
chr15:38484255|38484372 hsa-miR-1229-5p 1 0 0
chr15:38484255|38484372 hsa-miR-1908-3p 1 0 0
chr15:38484255|38484372 hsa-miR-6771-5p 1 0 0
chr15:38484255|38484372 hsa-miR-485-5p 1 1 0
chr15:38484255|38484372 hsa-miR-4787-5p 1 0 0
chr15:38484255|38484372 hsa-miR-149-3p 1 0 0
chr15:38484255|38484372 hsa-miR-6824-5p 1 1 0
chr15:38484255|38484372 hsa-miR-6776-3p 0 1 0
chr15:38484255|38484372 hsa-miR-3179 0 1 0
chr15:38484255|38484372 hsa-miR-10400-5p 0 1 0
chr15:38484255|38484372 hsa-miR-1207-5p 1 0 0
chr15:38484255|38484372 hsa-miR-1233-5p 1 0 0
chr15:38484255|38484372 hsa-miR-4763-3p 1 0 0
chr15:38484255|38484372 hsa-miR-1343-5p 1 0 0
chr15:38484255|38484372 hsa-miR-6756-5p 1 0 0
chr15:38484255|38484372 hsa-miR-6722-3p 1 0 0
chr15:38484255|38484372 hsa-miR-6763-5p 1 0 0
chr15:38484255|38484372 hsa-miR-6779-5p 1 0 0
chr15:38484255|38484372 hsa-miR-6780a-5p 1 0 0
chr15:38484255|38484372 hsa-miR-6797-5p 1 0 0
chr15:38484255|38484372 hsa-miR-6808-5p 1 0 0
chr15:38484255|38484372 hsa-miR-7111-5p 1 0 0
chr15:38484255|38484372 hsa-miR-4728-5p 1 0 0
chr15:38484255|38484372 hsa-miR-5196-5p 1 0 0
chr15:38484255|38484372 hsa-miR-6780b-5p 1 1 0
chr15:38484255|38484372 hsa-miR-1237-5p 1 0 0
chr15:38484255|38484372 hsa-miR-1909-3p 1 0 0
chr15:38484255|38484372 hsa-miR-4725-3p 1 0 0
chr15:38484255|38484372 hsa-miR-6729-5p 1 0 0
chr15:38484255|38484372 hsa-miR-6738-5p 1 0 0
chr15:38484255|38484372 hsa-miR-6858-5p 1 0 0
chr15:38484255|38484372 hsa-miR-6883-5p 1 1 0
chr15:38484255|38484372 hsa-miR-4723-5p 1 0 0
chr15:38484255|38484372 hsa-miR-939-5p 1 0 0
chr15:38484255|38484372 hsa-miR-1914-3p 1 0 0
chr15:38484255|38484372 hsa-miR-4646-5p 1 0 0
chr15:38484255|38484372 hsa-miR-4747-5p 1 1 0
chr15:38484255|38484372 hsa-miR-6785-5p 1 1 0
chr15:38484255|38484372 hsa-miR-550a-3-5p 1 1 0
chr15:38484255|38484372 hsa-miR-550a-5p 1 1 0
chr15:38484255|38484372 hsa-miR-4756-5p 1 0 0
chr15:38484255|38484372 hsa-miR-9902 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr15:38484255|38484372
ORF Type ORF1
Protein Length 30
Nucleotide Length 90
Protein Sequence MSLLPRGHFWRWWFNFIRPASPVRHPSHQH
Nucleotide Sequence TTGTCTCTTTTGCCAAGGGGGCATTTCTGGAGGTGGTGGTTCAATTTCATTCGGCCGGCCTCCCCTGTCAGGCACCCTTCCCATCAGCAC
CircID chr15:38484255|38484372
ORF Type ORF2
Protein Length 38
Nucleotide Length 114
Protein Sequence MMGRVPDRGGRPNEIEPPPPEMPPWQKRQEGGGGRGGW
Nucleotide Sequence CTGATGGGAAGGGTGCCTGACAGGGGAGGCCGGCCGAATGAAATTGAACCACCACCTCCAGAAATGCCCCCTTGGCAAAAGAGACAAGAAGGCGGCGGTGGAAGGGGTGGTTGG
CircID chr15:38484255|38484372
ORF Type ORF3
Protein Length 33
Nucleotide Length 99
Protein Sequence MTGEAGRMKLNHHLQKCPLGKRDKKAAVEGVVG
Nucleotide Sequence CTGACAGGGGAGGCCGGCCGAATGAAATTGAACCACCACCTCCAGAAATGCCCCCTTGGCAAAAGAGACAAGAAGGCGGCGGTGGAAGGGGTGGTTGGG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab