CircRNA Information

General Information
circRNA Basic Information
CircID chr15:40089528|40089686
Strand +
CircType exon
Host Gene ENSG00000104081.12;
Algorism CIRI2;
Sequence TATTCACCCCTTTTGGCAGACTCTCCACCTGAGTTCAGTGAGAGAGAAAATGATTTAGATCTTGGTGCTGGGGCAAGGCCATCAGCTTCAGAGACCTTGCCAGGCCCAGGCTGGGTGCCCTGTGGCCTGAGAACTGAGCCCAGACTTTGACAAACCCAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr15:40089528|40089686 hsa-miR-29a-5p 0 0 1
chr15:40089528|40089686 hsa-miR-29a-3p 0 0 1
chr15:40089528|40089686 hsa-miR-31-5p 0 0 1
chr15:40089528|40089686 hsa-miR-31-3p 0 0 1
chr15:40089528|40089686 hsa-miR-185-5p 0 0 1
chr15:40089528|40089686 hsa-miR-185-3p 0 0 1
chr15:40089528|40089686 hsa-miR-29c-5p 0 0 1
chr15:40089528|40089686 hsa-miR-29c-3p 0 0 1
chr15:40089528|40089686 hsa-miR-346 0 0 1
chr15:40089528|40089686 hsa-miR-520g-5p 0 0 1
chr15:40089528|40089686 hsa-miR-520g-3p 0 0 1
chr15:40089528|40089686 hsa-miR-520h 0 0 1
chr15:40089528|40089686 hsa-miR-510-5p 0 0 1
chr15:40089528|40089686 hsa-miR-510-3p 0 0 1
chr15:40089528|40089686 hsa-miR-593-5p 0 0 1
chr15:40089528|40089686 hsa-miR-593-3p 0 0 1
chr15:40089528|40089686 hsa-miR-612 1 0 1
chr15:40089528|40089686 hsa-miR-629-5p 0 0 1
chr15:40089528|40089686 hsa-miR-629-3p 0 0 1
chr15:40089528|40089686 hsa-miR-661 1 1 1
chr15:40089528|40089686 hsa-miR-1266-5p 0 0 1
chr15:40089528|40089686 hsa-miR-1266-3p 0 0 1
chr15:40089528|40089686 hsa-miR-127-5p 0 1 1
chr15:40089528|40089686 hsa-miR-125a-3p 0 0 1
chr15:40089528|40089686 hsa-miR-220c 0 0 1
chr15:40089528|40089686 hsa-miR-1285 0 0 1
chr15:40089528|40089686 hsa-miR-24 0 0 1
chr15:40089528|40089686 hsa-miR-29b 0 0 1
chr15:40089528|40089686 hsa-miR-762 1 0 0
chr15:40089528|40089686 hsa-miR-1182 0 1 0
chr15:40089528|40089686 hsa-miR-2861 1 1 0
chr15:40089528|40089686 hsa-miR-4277 0 1 0
chr15:40089528|40089686 hsa-miR-378g 0 1 0
chr15:40089528|40089686 hsa-miR-4539 0 1 0
chr15:40089528|40089686 hsa-miR-4656 1 0 0
chr15:40089528|40089686 hsa-miR-4674 1 1 0
chr15:40089528|40089686 hsa-miR-8075 0 1 0
chr15:40089528|40089686 hsa-miR-12113 0 1 0
chr15:40089528|40089686 hsa-miR-12114 0 1 0
chr15:40089528|40089686 hsa-miR-1972 0 1 0
chr15:40089528|40089686 hsa-miR-6854-5p 0 1 0
chr15:40089528|40089686 hsa-miR-24-3p 1 1 0
chr15:40089528|40089686 hsa-miR-874-5p 0 1 0
chr15:40089528|40089686 hsa-miR-6849-3p 0 1 0
chr15:40089528|40089686 hsa-miR-1915-5p 0 1 0
chr15:40089528|40089686 hsa-miR-6793-5p 0 1 0
chr15:40089528|40089686 hsa-miR-939-3p 0 1 0
chr15:40089528|40089686 hsa-miR-4640-5p 1 0 0
chr15:40089528|40089686 hsa-miR-6749-5p 1 0 0
chr15:40089528|40089686 hsa-miR-3065-3p 1 1 0
chr15:40089528|40089686 hsa-miR-4724-5p 0 1 0
chr15:40089528|40089686 hsa-miR-4717-5p 0 1 0
chr15:40089528|40089686 hsa-miR-29b-3p 0 1 0
chr15:40089528|40089686 hsa-miR-4763-3p 1 0 0
chr15:40089528|40089686 hsa-miR-7107-5p 1 0 0
chr15:40089528|40089686 hsa-miR-3620-5p 1 0 0
chr15:40089528|40089686 hsa-miR-6833-3p 0 1 0
chr15:40089528|40089686 hsa-miR-181b-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr15:40089528|40089686
ORF Type ORF1
Protein Length 45
Nucleotide Length 138
Protein Sequence MADSPPEFSERENDLDLGAGARPSASETLPGPGWVPCGLRTEPRL
Nucleotide Sequence TTGGCAGACTCTCCACCTGAGTTCAGTGAGAGAGAAAATGATTTAGATCTTGGTGCTGGGGCAAGGCCATCAGCTTCAGAGACCTTGCCAGGCCCAGGCTGGGTGCCCTGTGGCCTGAGAACTGAGCCCAGACTTTGA
CircID chr15:40089528|40089686
ORF Type ORF2
Protein Length 47
Nucleotide Length 141
Protein Sequence MGSVLRPQGTQPGPGKVSEADGLAPAPRSKSFSLSLNSGGESAKRGE
Nucleotide Sequence CTGGGCTCAGTTCTCAGGCCACAGGGCACCCAGCCTGGGCCTGGCAAGGTCTCTGAAGCTGATGGCCTTGCCCCAGCACCAAGATCTAAATCATTTTCTCTCTCACTGAACTCAGGTGGAGAGTCTGCCAAAAGGGGTGAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab