CircRNA Information

General Information
circRNA Basic Information
CircID chr15:40419040|40419246
Strand +
CircType exon
Host Gene ENSG00000128928.7;
Algorism CIRI2;
Sequence ACACCACCTTGCCTGGCCAAGCAAGCATATGTGTTCATAAGCTGCTAGGAGCTGATACCTCTAGAAACTGGAAGAAACAAGGGCCAGGGTTTTTTTGTTTTGTTTTGTTTTTTGAAGAGTTTTGCTCTTGTCGCCCAGGCTGGAGTGCAATGGCACAAGCTCGGCTCACTGCAACGTCCGCCTCCTGGGTTCAAGTAATTCTCCTGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr15:40419040|40419246 hsa-miR-15a-5p 0 0 1
chr15:40419040|40419246 hsa-miR-15a-3p 0 0 1
chr15:40419040|40419246 hsa-miR-21-5p 0 0 1
chr15:40419040|40419246 hsa-miR-21-3p 0 0 1
chr15:40419040|40419246 hsa-miR-25-5p 0 0 1
chr15:40419040|40419246 hsa-miR-25-3p 0 0 1
chr15:40419040|40419246 hsa-miR-32-5p 0 0 1
chr15:40419040|40419246 hsa-miR-32-3p 0 0 1
chr15:40419040|40419246 hsa-miR-15b-5p 0 0 1
chr15:40419040|40419246 hsa-miR-15b-3p 0 0 1
chr15:40419040|40419246 hsa-miR-195-5p 0 0 1
chr15:40419040|40419246 hsa-miR-195-3p 0 0 1
chr15:40419040|40419246 hsa-miR-363-5p 0 0 1
chr15:40419040|40419246 hsa-miR-363-3p 0 0 1
chr15:40419040|40419246 hsa-miR-367-5p 0 0 1
chr15:40419040|40419246 hsa-miR-367-3p 0 0 1
chr15:40419040|40419246 hsa-miR-328-5p 0 0 1
chr15:40419040|40419246 hsa-miR-328-3p 0 0 1
chr15:40419040|40419246 hsa-miR-335-5p 0 0 1
chr15:40419040|40419246 hsa-miR-335-3p 0 0 1
chr15:40419040|40419246 hsa-miR-424-5p 0 0 1
chr15:40419040|40419246 hsa-miR-424-3p 0 0 1
chr15:40419040|40419246 hsa-miR-202-5p 0 0 1
chr15:40419040|40419246 hsa-miR-202-3p 0 0 1
chr15:40419040|40419246 hsa-miR-497-5p 0 0 1
chr15:40419040|40419246 hsa-miR-497-3p 0 0 1
chr15:40419040|40419246 hsa-miR-503-5p 0 0 1
chr15:40419040|40419246 hsa-miR-503-3p 0 0 1
chr15:40419040|40419246 hsa-miR-92b-5p 0 0 1
chr15:40419040|40419246 hsa-miR-92b-3p 0 0 1
chr15:40419040|40419246 hsa-miR-588 0 0 1
chr15:40419040|40419246 hsa-miR-646 0 0 1
chr15:40419040|40419246 hsa-miR-661 0 0 1
chr15:40419040|40419246 hsa-miR-1323 0 0 1
chr15:40419040|40419246 hsa-miR-766-5p 0 0 1
chr15:40419040|40419246 hsa-miR-766-3p 0 0 1
chr15:40419040|40419246 hsa-miR-665 0 1 1
chr15:40419040|40419246 hsa-miR-1227-5p 0 0 1
chr15:40419040|40419246 hsa-miR-1227-3p 0 0 1
chr15:40419040|40419246 hsa-miR-1291 0 0 1
chr15:40419040|40419246 hsa-miR-548o-3p 0 0 1
chr15:40419040|40419246 hsa-miR-548p 0 0 1
chr15:40419040|40419246 hsa-miR-548o 0 0 1
chr15:40419040|40419246 hsa-miR-145-5p 0 1 1
chr15:40419040|40419246 hsa-miR-508-5p 0 1 1
chr15:40419040|40419246 hsa-miR-518d-5p 0 1 1
chr15:40419040|40419246 hsa-miR-519b-5p 0 1 1
chr15:40419040|40419246 hsa-miR-519c-5p 0 1 1
chr15:40419040|40419246 hsa-miR-520c-5p 0 1 1
chr15:40419040|40419246 hsa-miR-590-5p 0 0 1
chr15:40419040|40419246 hsa-miR-548d-3p 0 0 1
chr15:40419040|40419246 hsa-miR-16 0 0 1
chr15:40419040|40419246 hsa-miR-1273 0 0 1
chr15:40419040|40419246 hsa-miR-526a 0 0 1
chr15:40419040|40419246 hsa-miR-92a 0 0 1
chr15:40419040|40419246 hsa-miR-711 0 1 0
chr15:40419040|40419246 hsa-miR-1273c 0 1 0
chr15:40419040|40419246 hsa-miR-3937 0 1 0
chr15:40419040|40419246 hsa-miR-4537 1 1 0
chr15:40419040|40419246 hsa-miR-5190 1 0 0
chr15:40419040|40419246 hsa-miR-5684 0 1 0
chr15:40419040|40419246 hsa-miR-7703 0 1 0
chr15:40419040|40419246 hsa-miR-6720-5p 0 1 0
chr15:40419040|40419246 hsa-miR-4695-5p 1 0 0
chr15:40419040|40419246 hsa-miR-4722-5p 0 1 0
chr15:40419040|40419246 hsa-miR-6849-3p 0 1 0
chr15:40419040|40419246 hsa-miR-6760-5p 1 0 0
chr15:40419040|40419246 hsa-miR-92a-3p 0 1 0
chr15:40419040|40419246 hsa-miR-520g-5p 0 1 0
chr15:40419040|40419246 hsa-miR-455-5p 0 1 0
chr15:40419040|40419246 hsa-miR-6732-3p 0 1 0
chr15:40419040|40419246 hsa-miR-4668-3p 0 1 0
chr15:40419040|40419246 hsa-miR-6851-5p 1 0 0
chr15:40419040|40419246 hsa-miR-518e-5p 0 1 0
chr15:40419040|40419246 hsa-miR-518f-5p 0 1 0
chr15:40419040|40419246 hsa-miR-519a-5p 0 1 0
chr15:40419040|40419246 hsa-miR-522-5p 0 1 0
chr15:40419040|40419246 hsa-miR-523-5p 0 1 0
chr15:40419040|40419246 hsa-miR-526a-5p 0 1 0
chr15:40419040|40419246 hsa-miR-5195-3p 0 1 0
chr15:40419040|40419246 hsa-miR-4645-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr15:40419040|40419246
ORF Type ORF1
Protein Length 48
Nucleotide Length 147
Protein Sequence MIPLETGRNKGQGFFVLFCFLKSFALVAQAGVQWHKLGSLQRPPPGFK
Nucleotide Sequence CTGATACCTCTAGAAACTGGAAGAAACAAGGGCCAGGGTTTTTTTGTTTTGTTTTGTTTTTTGAAGAGTTTTGCTCTTGTCGCCCAGGCTGGAGTGCAATGGCACAAGCTCGGCTCACTGCAACGTCCGCCTCCTGGGTTCAAGTAA
CircID chr15:40419040|40419246
ORF Type ORF2
Protein Length 28
Nucleotide Length 84
Protein Sequence MLLSPRLECNGTSSAHCNVRLLGSSNSP
Nucleotide Sequence TTGCTCTTGTCGCCCAGGCTGGAGTGCAATGGCACAAGCTCGGCTCACTGCAACGTCCGCCTCCTGGGTTCAAGTAATTCTCCT
CircID chr15:40419040|40419246
ORF Type ORF3
Protein Length 66
Nucleotide Length 198
Protein Sequence MPGQASICVHKLLGADTSRNWKKQGPGFFCFVLFFEEFCSCRPGWSAMAQARLTATSASWVQVILL
Nucleotide Sequence TTGCCTGGCCAAGCAAGCATATGTGTTCATAAGCTGCTAGGAGCTGATACCTCTAGAAACTGGAAGAAACAAGGGCCAGGGTTTTTTTGTTTTGTTTTGTTTTTTGAAGAGTTTTGCTCTTGTCGCCCAGGCTGGAGTGCAATGGCACAAGCTCGGCTCACTGCAACGTCCGCCTCCTGGGTTCAAGTAATTCTCCTG
CircID chr15:40419040|40419246
ORF Type ORF4
Protein Length 29
Nucleotide Length 90
Protein Sequence MHSSLGDKSKTLQKTKQNKKTLALVSSSF
Nucleotide Sequence TTGCACTCCAGCCTGGGCGACAAGAGCAAAACTCTTCAAAAAACAAAACAAAACAAAAAAACCCTGGCCCTTGTTTCTTCCAGTTTCTAG
CircID chr15:40419040|40419246
ORF Type ORF5
Protein Length 49
Nucleotide Length 150
Protein Sequence MNPGGGRCSEPSLCHCTPAWATRAKLFKKQNKTKKPWPLFLPVSRGISS
Nucleotide Sequence TTGAACCCAGGAGGCGGACGTTGCAGTGAGCCGAGCTTGTGCCATTGCACTCCAGCCTGGGCGACAAGAGCAAAACTCTTCAAAAAACAAAACAAAACAAAAAAACCCTGGCCCTTGTTTCTTCCAGTTTCTAGAGGTATCAGCTCCTAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab