CircRNA Information

General Information
circRNA Basic Information
CircID chr15:40428638|40428755
Strand -
CircType exon
Host Gene
Algorism CIRI2;
Sequence CTTTGTATTGCAGTTTTTCTGCCCTCCCACCTGATCACCCACACCTCCAAGGGGGCTGCAACCTCCTGTTCGGGACTCCTGAGCCTGGAGAGAGGCTGTGGGGGGTGGGGCAAGAGCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr15:40428638|40428755 hsa-miR-383-5p 0 0 1
chr15:40428638|40428755 hsa-miR-383-3p 0 0 1
chr15:40428638|40428755 hsa-miR-484 0 1 1
chr15:40428638|40428755 hsa-miR-432-5p 0 0 1
chr15:40428638|40428755 hsa-miR-432-3p 0 0 1
chr15:40428638|40428755 hsa-miR-1301-5p 0 0 1
chr15:40428638|40428755 hsa-miR-1301-3p 0 0 1
chr15:40428638|40428755 hsa-miR-766-5p 0 0 1
chr15:40428638|40428755 hsa-miR-766-3p 0 0 1
chr15:40428638|40428755 hsa-miR-548e-5p 0 0 1
chr15:40428638|40428755 hsa-miR-548e-3p 0 0 1
chr15:40428638|40428755 hsa-miR-1262 0 0 1
chr15:40428638|40428755 hsa-miR-125a-3p 0 0 1
chr15:40428638|40428755 hsa-miR-1289 0 0 1
chr15:40428638|40428755 hsa-miR-524-5p 0 0 1
chr15:40428638|40428755 hsa-miR-548a-3p 0 0 1
chr15:40428638|40428755 hsa-miR-520d-5p 0 0 1
chr15:40428638|40428755 hsa-miR-548f 0 0 1
chr15:40428638|40428755 hsa-miR-24 0 0 1
chr15:40428638|40428755 hsa-miR-768-5p 0 0 1
chr15:40428638|40428755 hsa-miR-665 0 1 0
chr15:40428638|40428755 hsa-miR-3132 1 0 0
chr15:40428638|40428755 hsa-miR-3155a 0 1 0
chr15:40428638|40428755 hsa-miR-3183 0 1 0
chr15:40428638|40428755 hsa-miR-3155b 0 1 0
chr15:40428638|40428755 hsa-miR-4651 1 0 0
chr15:40428638|40428755 hsa-miR-92a-1-5p 1 0 0
chr15:40428638|40428755 hsa-miR-24-3p 0 1 0
chr15:40428638|40428755 hsa-miR-6759-5p 0 1 0
chr15:40428638|40428755 hsa-miR-197-5p 1 0 0
chr15:40428638|40428755 hsa-miR-6748-5p 1 1 0
chr15:40428638|40428755 hsa-miR-7109-5p 1 0 0
chr15:40428638|40428755 hsa-miR-149-3p 1 1 0
chr15:40428638|40428755 hsa-miR-6802-5p 1 1 0
chr15:40428638|40428755 hsa-miR-7156-3p 0 1 0
chr15:40428638|40428755 hsa-miR-654-5p 1 0 0
chr15:40428638|40428755 hsa-miR-4758-3p 0 1 0
chr15:40428638|40428755 hsa-miR-6741-3p 0 1 0
chr15:40428638|40428755 hsa-miR-3664-3p 0 1 0
chr15:40428638|40428755 hsa-miR-4433a-5p 0 1 0
chr15:40428638|40428755 hsa-miR-4433b-5p 0 1 0
chr15:40428638|40428755 hsa-miR-6812-3p 0 1 0
chr15:40428638|40428755 hsa-miR-6729-3p 0 1 0
chr15:40428638|40428755 hsa-miR-4772-5p 0 1 0
chr15:40428638|40428755 hsa-miR-1233-5p 1 1 0
chr15:40428638|40428755 hsa-miR-1273h-5p 1 1 0
chr15:40428638|40428755 hsa-miR-6769b-5p 1 0 0
chr15:40428638|40428755 hsa-miR-6778-5p 1 1 0
chr15:40428638|40428755 hsa-miR-6787-5p 1 0 0
chr15:40428638|40428755 hsa-miR-6865-5p 1 0 0
chr15:40428638|40428755 hsa-miR-6752-5p 1 0 0
chr15:40428638|40428755 hsa-miR-6756-5p 1 0 0
chr15:40428638|40428755 hsa-miR-6819-5p 1 0 0
chr15:40428638|40428755 hsa-miR-6780a-5p 1 1 0
chr15:40428638|40428755 hsa-miR-6879-5p 1 1 0
chr15:40428638|40428755 hsa-miR-4728-5p 1 1 0
chr15:40428638|40428755 hsa-miR-328-5p 1 0 0
chr15:40428638|40428755 hsa-miR-4701-3p 0 1 0
chr15:40428638|40428755 hsa-miR-6735-5p 0 1 0
chr15:40428638|40428755 hsa-miR-6795-5p 1 0 0
chr15:40428638|40428755 hsa-miR-6883-5p 1 0 0
chr15:40428638|40428755 hsa-miR-4436b-3p 0 1 0
chr15:40428638|40428755 hsa-miR-6885-5p 1 0 0
chr15:40428638|40428755 hsa-miR-1266-5p 0 1 0
chr15:40428638|40428755 hsa-miR-6731-5p 1 0 0
chr15:40428638|40428755 hsa-miR-7843-5p 0 1 0
chr15:40428638|40428755 hsa-miR-1914-3p 1 0 0
chr15:40428638|40428755 hsa-miR-377-5p 0 1 0
chr15:40428638|40428755 hsa-miR-6877-3p 0 1 0
chr15:40428638|40428755 hsa-miR-6766-5p 1 0 0
chr15:40428638|40428755 hsa-miR-6785-5p 1 1 0
chr15:40428638|40428755 hsa-miR-3689d 0 1 0
chr15:40428638|40428755 hsa-miR-6819-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr15:40428638|40428755
ORF Type ORF1
Protein Length 33
Nucleotide Length 99
Protein Sequence MPSHLITHTSKGAATSCSGLLSLERGCGGWGKS
Nucleotide Sequence CTGCCCTCCCACCTGATCACCCACACCTCCAAGGGGGCTGCAACCTCCTGTTCGGGACTCCTGAGCCTGGAGAGAGGCTGTGGGGGGTGGGGCAAGAGC
CircID chr15:40428638|40428755
ORF Type ORF2
Protein Length 38
Nucleotide Length 114
Protein Sequence LYCSFSALPPDHPHLQGGCNLLFGTPEPGERLWGVGQE
Nucleotide Sequence TTGTATTGCAGTTTTTCTGCCCTCCCACCTGATCACCCACACCTCCAAGGGGGCTGCAACCTCCTGTTCGGGACTCCTGAGCCTGGAGAGAGGCTGTGGGGGGTGGGGCAAGAG
CircID chr15:40428638|40428755
ORF Type ORF3
Protein Length 37
Nucleotide Length 111
Protein Sequence MPHPPQPLSRLRSPEQEVAAPLEVWVIRWEGRKTAIQ
Nucleotide Sequence TTGCCCCACCCCCCACAGCCTCTCTCCAGGCTCAGGAGTCCCGAACAGGAGGTTGCAGCCCCCTTGGAGGTGTGGGTGATCAGGTGGGAGGGCAGAAAAACTGCAATACAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab