CircRNA Information

General Information
circRNA Basic Information
CircID chr15:40695161|40695321
Strand +
CircType exon
Host Gene ENSG00000051180.15;
Algorism CIRI2;
Sequence GCTCCACTTCTCTACTCGCTTGCCCCAGCCTTCTGCGCACAACCCAGATGAGTTGCAGTTCCCAGCTGCACGCCTCGGGAAGCGCCGCACTCTCCTTAGGGCTCGGTCTCTGGCCGCTGCGCGCGGTCCGCCAGCGGCTTTCAGAATTCCCGCCAAACCCT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr15:40695161|40695321 hsa-miR-210-5p 0 0 1
chr15:40695161|40695321 hsa-miR-210-3p 0 0 1
chr15:40695161|40695321 hsa-miR-1301-5p 0 0 1
chr15:40695161|40695321 hsa-miR-1301-3p 0 0 1
chr15:40695161|40695321 hsa-miR-298 0 0 1
chr15:40695161|40695321 hsa-miR-891b 0 0 1
chr15:40695161|40695321 hsa-miR-147b-5p 0 0 1
chr15:40695161|40695321 hsa-miR-147b-3p 0 0 1
chr15:40695161|40695321 hsa-miR-933 0 0 1
chr15:40695161|40695321 hsa-miR-1292-5p 0 0 1
chr15:40695161|40695321 hsa-miR-1292-3p 0 0 1
chr15:40695161|40695321 hsa-miR-486-3p 1 0 1
chr15:40695161|40695321 hsa-miR-615-3p 0 0 1
chr15:40695161|40695321 hsa-miR-1207-3p 0 0 1
chr15:40695161|40695321 hsa-miR-1233 0 0 1
chr15:40695161|40695321 hsa-miR-663 0 0 1
chr15:40695161|40695321 hsa-miR-663a 1 0 0
chr15:40695161|40695321 hsa-miR-762 1 0 0
chr15:40695161|40695321 hsa-miR-665 1 0 0
chr15:40695161|40695321 hsa-miR-3132 0 1 0
chr15:40695161|40695321 hsa-miR-3153 1 1 0
chr15:40695161|40695321 hsa-miR-3174 0 1 0
chr15:40695161|40695321 hsa-miR-4260 1 0 0
chr15:40695161|40695321 hsa-miR-3652 1 0 0
chr15:40695161|40695321 hsa-miR-3929 1 0 0
chr15:40695161|40695321 hsa-miR-4430 1 0 0
chr15:40695161|40695321 hsa-miR-3135b 1 0 0
chr15:40695161|40695321 hsa-miR-4489 1 0 0
chr15:40695161|40695321 hsa-miR-4492 1 0 0
chr15:40695161|40695321 hsa-miR-4498 1 0 0
chr15:40695161|40695321 hsa-miR-4505 1 0 0
chr15:40695161|40695321 hsa-miR-2392 1 0 0
chr15:40695161|40695321 hsa-miR-4507 1 1 0
chr15:40695161|40695321 hsa-miR-4521 0 1 0
chr15:40695161|40695321 hsa-miR-1587 1 0 0
chr15:40695161|40695321 hsa-miR-4706 1 0 0
chr15:40695161|40695321 hsa-miR-5047 0 1 0
chr15:40695161|40695321 hsa-miR-5192 0 1 0
chr15:40695161|40695321 hsa-miR-5787 1 1 0
chr15:40695161|40695321 hsa-miR-6090 1 0 0
chr15:40695161|40695321 hsa-miR-6125 1 0 0
chr15:40695161|40695321 hsa-miR-6165 1 0 0
chr15:40695161|40695321 hsa-miR-8059 0 1 0
chr15:40695161|40695321 hsa-miR-8089 1 0 0
chr15:40695161|40695321 hsa-miR-12117 0 1 0
chr15:40695161|40695321 hsa-miR-4731-5p 1 1 0
chr15:40695161|40695321 hsa-miR-1227-5p 1 0 0
chr15:40695161|40695321 hsa-miR-6089 1 0 0
chr15:40695161|40695321 hsa-miR-4695-5p 1 1 0
chr15:40695161|40695321 hsa-miR-4722-5p 1 1 0
chr15:40695161|40695321 hsa-miR-3677-5p 0 1 0
chr15:40695161|40695321 hsa-miR-6890-5p 1 0 0
chr15:40695161|40695321 hsa-miR-6727-5p 1 0 0
chr15:40695161|40695321 hsa-miR-6721-5p 1 0 0
chr15:40695161|40695321 hsa-miR-8069 1 0 0
chr15:40695161|40695321 hsa-miR-6881-5p 1 0 0
chr15:40695161|40695321 hsa-miR-6782-5p 1 0 0
chr15:40695161|40695321 hsa-miR-185-5p 1 0 0
chr15:40695161|40695321 hsa-miR-4640-5p 1 0 0
chr15:40695161|40695321 hsa-miR-4690-5p 1 0 0
chr15:40695161|40695321 hsa-miR-3944-5p 1 0 0
chr15:40695161|40695321 hsa-miR-6869-3p 0 1 0
chr15:40695161|40695321 hsa-miR-4766-5p 0 1 0
chr15:40695161|40695321 hsa-miR-4763-3p 1 0 0
chr15:40695161|40695321 hsa-miR-6787-5p 1 0 0
chr15:40695161|40695321 hsa-miR-5001-5p 1 0 0
chr15:40695161|40695321 hsa-miR-6756-5p 1 0 0
chr15:40695161|40695321 hsa-miR-6879-5p 1 0 0
chr15:40695161|40695321 hsa-miR-3620-5p 1 0 0
chr15:40695161|40695321 hsa-miR-6780b-5p 1 0 0
chr15:40695161|40695321 hsa-miR-6862-5p 1 0 0
chr15:40695161|40695321 hsa-miR-4649-5p 1 0 0
chr15:40695161|40695321 hsa-miR-4726-5p 1 0 0
chr15:40695161|40695321 hsa-miR-4745-5p 1 0 0
chr15:40695161|40695321 hsa-miR-4436b-3p 1 0 0
chr15:40695161|40695321 hsa-miR-4723-5p 1 0 0
chr15:40695161|40695321 hsa-miR-6845-5p 1 0 0
chr15:40695161|40695321 hsa-miR-939-5p 1 0 0
chr15:40695161|40695321 hsa-miR-3940-5p 1 1 0
chr15:40695161|40695321 hsa-miR-6731-5p 1 0 0
chr15:40695161|40695321 hsa-miR-4646-5p 0 1 0
chr15:40695161|40695321 hsa-miR-4667-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr15:40695161|40695321
ORF Type ORF1
Protein Length 47
Nucleotide Length 141
Protein Sequence MPQPSAHNPDELQFPAARLGKRRTLLRARSLAAARGPPAAFRIPAKP
Nucleotide Sequence TTGCCCCAGCCTTCTGCGCACAACCCAGATGAGTTGCAGTTCCCAGCTGCACGCCTCGGGAAGCGCCGCACTCTCCTTAGGGCTCGGTCTCTGGCCGCTGCGCGCGGTCCGCCAGCGGCTTTCAGAATTCCCGCCAAACCC
CircID chr15:40695161|40695321
ORF Type ORF2
Protein Length 43
Nucleotide Length 129
Protein Sequence MRTTQMSCSSQLHASGSAALSLGLGLWPLRAVRQRLSEFPPNP
Nucleotide Sequence CTGCGCACAACCCAGATGAGTTGCAGTTCCCAGCTGCACGCCTCGGGAAGCGCCGCACTCTCCTTAGGGCTCGGTCTCTGGCCGCTGCGCGCGGTCCGCCAGCGGCTTTCAGAATTCCCGCCAAACCCT
CircID chr15:40695161|40695321
ORF Type ORF3
Protein Length 52
Nucleotide Length 156
Protein Sequence MAGILKAAGGPRAAARDRALRRVRRFPRRAAGNCNSSGLCAEGWGKRVEKWS
Nucleotide Sequence TTGGCGGGAATTCTGAAAGCCGCTGGCGGACCGCGCGCAGCGGCCAGAGACCGAGCCCTAAGGAGAGTGCGGCGCTTCCCGAGGCGTGCAGCTGGGAACTGCAACTCATCTGGGTTGTGCGCAGAAGGCTGGGGCAAGCGAGTAGAGAAGTGGAGC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab