CircRNA Information

General Information
circRNA Basic Information
CircID chr15:40853124|40853245
Strand +
CircType exon
Host Gene ENSG00000166145.13;
Algorism CIRI2;
Sequence CCTGACATCCGTGTCACCCCGCAGTAGGCGCCAATCTGTGTTTTCCACATCCTTCAGCACCAGGGGTTCCTGGGGTTGTACCTTCAAGTCTATGCCTGCCCAGGCCTTGGGGATCCCAGACC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr15:40853124|40853245 hsa-miR-493-5p 0 0 1
chr15:40853124|40853245 hsa-miR-493-3p 0 0 1
chr15:40853124|40853245 hsa-miR-570-5p 0 0 1
chr15:40853124|40853245 hsa-miR-570-3p 0 0 1
chr15:40853124|40853245 hsa-miR-612 1 1 1
chr15:40853124|40853245 hsa-miR-638 1 0 1
chr15:40853124|40853245 hsa-miR-661 0 0 1
chr15:40853124|40853245 hsa-miR-744-5p 0 0 1
chr15:40853124|40853245 hsa-miR-744-3p 0 0 1
chr15:40853124|40853245 hsa-miR-873-5p 0 0 1
chr15:40853124|40853245 hsa-miR-873-3p 0 0 1
chr15:40853124|40853245 hsa-miR-1265 0 0 1
chr15:40853124|40853245 hsa-miR-1252-5p 0 0 1
chr15:40853124|40853245 hsa-miR-1252-3p 0 0 1
chr15:40853124|40853245 hsa-miR-566 0 0 1
chr15:40853124|40853245 hsa-miR-331-3p 0 0 1
chr15:40853124|40853245 hsa-miR-769-3p 1 1 1
chr15:40853124|40853245 hsa-miR-450b-3p 0 0 1
chr15:40853124|40853245 hsa-miR-1285 0 0 1
chr15:40853124|40853245 hsa-miR-555 1 0 0
chr15:40853124|40853245 hsa-miR-548q 0 1 0
chr15:40853124|40853245 hsa-miR-2861 1 0 0
chr15:40853124|40853245 hsa-miR-3141 1 0 0
chr15:40853124|40853245 hsa-miR-3147 1 0 0
chr15:40853124|40853245 hsa-miR-4269 1 0 0
chr15:40853124|40853245 hsa-miR-3135b 1 0 0
chr15:40853124|40853245 hsa-miR-4462 0 1 0
chr15:40853124|40853245 hsa-miR-4486 1 0 0
chr15:40853124|40853245 hsa-miR-4498 1 0 0
chr15:40853124|40853245 hsa-miR-4635 0 1 0
chr15:40853124|40853245 hsa-miR-4734 1 1 0
chr15:40853124|40853245 hsa-miR-4736 1 0 0
chr15:40853124|40853245 hsa-miR-5572 1 0 0
chr15:40853124|40853245 hsa-miR-6069 1 0 0
chr15:40853124|40853245 hsa-miR-6860 1 1 0
chr15:40853124|40853245 hsa-miR-6840-3p 0 1 0
chr15:40853124|40853245 hsa-miR-4726-3p 1 0 0
chr15:40853124|40853245 hsa-miR-671-5p 1 0 0
chr15:40853124|40853245 hsa-miR-6861-5p 1 0 0
chr15:40853124|40853245 hsa-miR-6894-5p 1 0 0
chr15:40853124|40853245 hsa-miR-6515-5p 0 1 0
chr15:40853124|40853245 hsa-miR-6089 1 0 0
chr15:40853124|40853245 hsa-miR-6727-5p 1 0 0
chr15:40853124|40853245 hsa-miR-6806-5p 1 0 0
chr15:40853124|40853245 hsa-miR-6721-5p 1 1 0
chr15:40853124|40853245 hsa-miR-6742-5p 1 0 0
chr15:40853124|40853245 hsa-miR-6821-5p 1 0 0
chr15:40853124|40853245 hsa-miR-615-5p 1 1 0
chr15:40853124|40853245 hsa-miR-939-3p 1 0 0
chr15:40853124|40853245 hsa-miR-204-3p 1 0 0
chr15:40853124|40853245 hsa-miR-1229-5p 1 0 0
chr15:40853124|40853245 hsa-miR-4764-5p 0 1 0
chr15:40853124|40853245 hsa-miR-1228-5p 1 0 0
chr15:40853124|40853245 hsa-miR-7112-5p 1 0 0
chr15:40853124|40853245 hsa-miR-1250-5p 1 0 0
chr15:40853124|40853245 hsa-miR-24-2-5p 0 1 0
chr15:40853124|40853245 hsa-miR-24-1-5p 0 1 0
chr15:40853124|40853245 hsa-miR-509-3p 0 1 0
chr15:40853124|40853245 hsa-miR-576-3p 0 1 0
chr15:40853124|40853245 hsa-miR-1207-5p 1 0 0
chr15:40853124|40853245 hsa-miR-4763-3p 1 0 0
chr15:40853124|40853245 hsa-miR-6816-5p 1 0 0
chr15:40853124|40853245 hsa-miR-7107-5p 1 0 0
chr15:40853124|40853245 hsa-miR-6774-5p 1 0 0
chr15:40853124|40853245 hsa-miR-6879-5p 1 0 0
chr15:40853124|40853245 hsa-miR-3620-5p 1 0 0
chr15:40853124|40853245 hsa-miR-5189-5p 1 1 0
chr15:40853124|40853245 hsa-miR-6836-5p 1 0 0
chr15:40853124|40853245 hsa-miR-6862-5p 1 0 0
chr15:40853124|40853245 hsa-miR-10396a-5p 1 0 0
chr15:40853124|40853245 hsa-miR-328-5p 1 0 0
chr15:40853124|40853245 hsa-miR-4685-5p 1 1 0
chr15:40853124|40853245 hsa-miR-4749-5p 1 0 0
chr15:40853124|40853245 hsa-miR-3187-5p 1 1 0
chr15:40853124|40853245 hsa-miR-4436b-3p 1 0 0
chr15:40853124|40853245 hsa-miR-10394-3p 1 0 0
chr15:40853124|40853245 hsa-miR-6511b-5p 1 0 0
chr15:40853124|40853245 hsa-miR-6785-5p 1 0 0
chr15:40853124|40853245 hsa-miR-4667-5p 1 0 0
chr15:40853124|40853245 hsa-miR-6791-5p 1 0 0
chr15:40853124|40853245 hsa-miR-619-5p 0 1 0
chr15:40853124|40853245 hsa-miR-6764-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr15:40853124|40853245
ORF Type ORF1
Protein Length 40
Nucleotide Length 120
Protein Sequence LTSVSPRSRRQSVFSTSFSTRGSWGCTFKSMPAQALGIPD
Nucleotide Sequence CTGACATCCGTGTCACCCCGCAGTAGGCGCCAATCTGTGTTTTCCACATCCTTCAGCACCAGGGGTTCCTGGGGTTGTACCTTCAAGTCTATGCCTGCCCAGGCCTTGGGGATCCCAGAC
CircID chr15:40853124|40853245
ORF Type ORF2
Protein Length 29
Nucleotide Length 87
Protein Sequence MCFPHPSAPGVPGVVPSSLCLPRPWGSQT
Nucleotide Sequence CTGTGTTTTCCACATCCTTCAGCACCAGGGGTTCCTGGGGTTGTACCTTCAAGTCTATGCCTGCCCAGGCCTTGGGGATCCCAGACC
CircID chr15:40853124|40853245
ORF Type ORF3
Protein Length 29
Nucleotide Length 90
Protein Sequence MGRHRLEGTTPGTPGAEGCGKHRLAPTAG
Nucleotide Sequence CTGGGCAGGCATAGACTTGAAGGTACAACCCCAGGAACCCCTGGTGCTGAAGGATGTGGAAAACACAGATTGGCGCCTACTGCGGGGTGA
CircID chr15:40853124|40853245
ORF Type ORF4
Protein Length 29
Nucleotide Length 87
Protein Sequence MKVQPQEPLVLKDVENTDWRLLRGDTDVR
Nucleotide Sequence TTGAAGGTACAACCCCAGGAACCCCTGGTGCTGAAGGATGTGGAAAACACAGATTGGCGCCTACTGCGGGGTGACACGGATGTCAGG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab