CircRNA Information

General Information
circRNA Basic Information
CircID chr15:40856865|40857158
Strand +
CircType exon
Host Gene ENSG00000166145.13;
Algorism CIRI2;
Sequence CTTTGAGCTTTCTCAGGACGTGAGCTTAGCTGAGACTTCTCCAAGAGGGGCTGGAGCCCTGGTCTCTGAGGCACAGTGGGCCTGGGAAACAGGCAAGAGTCTGGTTCCAAAGTTTTTCCCAGCCCAGGCCTCTGCCTTGGCAAGCAGGAAGCAGGGCCAGGTGAGAGCCGGTGAGACCCAGGCTCAGAGGGGCCGCGTGGTGTGGTTATAGACCAGGTGCTCCGTGTCCTCGGTAGTGGAGACAGTGGAGCTGGCAGGGGTGGGTGGTGGGTGGTGGTGGTGTCCGTGGAAGTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr15:40856865|40857158 hsa-miR-370-5p 0 0 1
chr15:40856865|40857158 hsa-miR-370-3p 0 0 1
chr15:40856865|40857158 hsa-miR-328-5p 0 0 1
chr15:40856865|40857158 hsa-miR-328-3p 0 0 1
chr15:40856865|40857158 hsa-miR-432-5p 0 0 1
chr15:40856865|40857158 hsa-miR-432-3p 0 0 1
chr15:40856865|40857158 hsa-miR-539-5p 0 0 1
chr15:40856865|40857158 hsa-miR-539-3p 0 0 1
chr15:40856865|40857158 hsa-miR-601 0 0 1
chr15:40856865|40857158 hsa-miR-611 0 0 1
chr15:40856865|40857158 hsa-miR-617 0 0 1
chr15:40856865|40857158 hsa-miR-620 0 0 1
chr15:40856865|40857158 hsa-miR-661 1 1 1
chr15:40856865|40857158 hsa-miR-766-5p 0 0 1
chr15:40856865|40857158 hsa-miR-766-3p 0 0 1
chr15:40856865|40857158 hsa-miR-1229-5p 0 0 1
chr15:40856865|40857158 hsa-miR-1229-3p 0 0 1
chr15:40856865|40857158 hsa-miR-1200 0 0 1
chr15:40856865|40857158 hsa-miR-1202 0 1 1
chr15:40856865|40857158 hsa-miR-1291 0 0 1
chr15:40856865|40857158 hsa-miR-1270 0 0 1
chr15:40856865|40857158 hsa-miR-1197 0 0 1
chr15:40856865|40857158 hsa-miR-193a-5p 0 0 1
chr15:40856865|40857158 hsa-miR-516a-3p 0 0 1
chr15:40856865|40857158 hsa-miR-220b 0 0 1
chr15:40856865|40857158 hsa-miR-550 0 0 1
chr15:40856865|40857158 hsa-miR-551a 1 0 0
chr15:40856865|40857158 hsa-miR-602 1 0 0
chr15:40856865|40857158 hsa-miR-1264 0 1 0
chr15:40856865|40857158 hsa-miR-762 1 0 0
chr15:40856865|40857158 hsa-miR-1248 0 1 0
chr15:40856865|40857158 hsa-miR-1260a 0 1 0
chr15:40856865|40857158 hsa-miR-1470 1 0 0
chr15:40856865|40857158 hsa-miR-1260b 1 0 0
chr15:40856865|40857158 hsa-miR-4258 1 0 0
chr15:40856865|40857158 hsa-miR-3907 1 0 0
chr15:40856865|40857158 hsa-miR-378g 0 1 0
chr15:40856865|40857158 hsa-miR-4462 0 1 0
chr15:40856865|40857158 hsa-miR-4516 0 1 0
chr15:40856865|40857158 hsa-miR-1587 0 1 0
chr15:40856865|40857158 hsa-miR-3972 0 1 0
chr15:40856865|40857158 hsa-miR-5703 0 1 0
chr15:40856865|40857158 hsa-miR-6070 1 0 0
chr15:40856865|40857158 hsa-miR-12125 0 1 0
chr15:40856865|40857158 hsa-miR-12126 0 1 0
chr15:40856865|40857158 hsa-miR-12131 0 1 0
chr15:40856865|40857158 hsa-miR-197-3p 1 1 0
chr15:40856865|40857158 hsa-miR-6749-3p 1 0 0
chr15:40856865|40857158 hsa-miR-149-5p 0 1 0
chr15:40856865|40857158 hsa-miR-6822-3p 1 0 0
chr15:40856865|40857158 hsa-miR-6720-5p 1 1 0
chr15:40856865|40857158 hsa-miR-25-5p 0 1 0
chr15:40856865|40857158 hsa-miR-4786-5p 0 1 0
chr15:40856865|40857158 hsa-miR-3663-3p 1 0 0
chr15:40856865|40857158 hsa-miR-6089 1 0 0
chr15:40856865|40857158 hsa-miR-593-5p 1 1 0
chr15:40856865|40857158 hsa-miR-770-5p 1 0 0
chr15:40856865|40857158 hsa-miR-6765-3p 0 1 0
chr15:40856865|40857158 hsa-miR-3194-5p 1 0 0
chr15:40856865|40857158 hsa-miR-5006-5p 0 1 0
chr15:40856865|40857158 hsa-miR-4713-5p 1 0 0
chr15:40856865|40857158 hsa-miR-615-3p 1 1 0
chr15:40856865|40857158 hsa-miR-6884-3p 1 0 0
chr15:40856865|40857158 hsa-miR-5088-5p 0 1 0
chr15:40856865|40857158 hsa-miR-4793-5p 1 1 0
chr15:40856865|40857158 hsa-miR-204-3p 0 1 0
chr15:40856865|40857158 hsa-miR-2277-3p 1 0 0
chr15:40856865|40857158 hsa-miR-1908-3p 1 0 0
chr15:40856865|40857158 hsa-miR-6753-5p 1 1 0
chr15:40856865|40857158 hsa-miR-6514-3p 0 1 0
chr15:40856865|40857158 hsa-miR-6749-5p 1 0 0
chr15:40856865|40857158 hsa-miR-4638-3p 1 0 0
chr15:40856865|40857158 hsa-miR-1304-3p 0 1 0
chr15:40856865|40857158 hsa-miR-6736-3p 0 1 0
chr15:40856865|40857158 hsa-miR-6742-3p 0 1 0
chr15:40856865|40857158 hsa-miR-550b-2-5p 0 1 0
chr15:40856865|40857158 hsa-miR-6776-3p 1 0 0
chr15:40856865|40857158 hsa-miR-1306-5p 1 0 0
chr15:40856865|40857158 hsa-miR-6769a-3p 0 1 0
chr15:40856865|40857158 hsa-miR-2115-5p 1 0 0
chr15:40856865|40857158 hsa-miR-1226-3p 1 0 0
chr15:40856865|40857158 hsa-miR-6730-3p 1 0 0
chr15:40856865|40857158 hsa-miR-6804-3p 0 1 0
chr15:40856865|40857158 hsa-miR-4758-3p 1 0 0
chr15:40856865|40857158 hsa-miR-1224-3p 1 0 0
chr15:40856865|40857158 hsa-miR-1180-5p 1 0 0
chr15:40856865|40857158 hsa-miR-6741-3p 0 1 0
chr15:40856865|40857158 hsa-miR-6837-3p 0 1 0
chr15:40856865|40857158 hsa-miR-6777-3p 1 0 0
chr15:40856865|40857158 hsa-miR-6760-3p 0 1 0
chr15:40856865|40857158 hsa-miR-6761-5p 0 1 0
chr15:40856865|40857158 hsa-miR-3173-5p 0 1 0
chr15:40856865|40857158 hsa-miR-6798-3p 1 0 0
chr15:40856865|40857158 hsa-miR-6729-3p 1 0 0
chr15:40856865|40857158 hsa-miR-4727-5p 0 1 0
chr15:40856865|40857158 hsa-miR-3162-3p 1 0 0
chr15:40856865|40857158 hsa-miR-6509-3p 0 1 0
chr15:40856865|40857158 hsa-miR-3617-3p 1 0 0
chr15:40856865|40857158 hsa-miR-1207-5p 1 0 0
chr15:40856865|40857158 hsa-miR-4763-3p 1 1 0
chr15:40856865|40857158 hsa-miR-6722-3p 1 0 0
chr15:40856865|40857158 hsa-miR-3620-5p 1 1 0
chr15:40856865|40857158 hsa-miR-4685-5p 0 1 0
chr15:40856865|40857158 hsa-miR-6511a-5p 0 1 0
chr15:40856865|40857158 hsa-miR-6799-3p 0 1 0
chr15:40856865|40857158 hsa-miR-1199-5p 0 1 0
chr15:40856865|40857158 hsa-miR-4722-3p 1 1 0
chr15:40856865|40857158 hsa-miR-6727-3p 0 1 0
chr15:40856865|40857158 hsa-miR-6511a-3p 1 1 0
chr15:40856865|40857158 hsa-miR-6792-3p 1 0 0
chr15:40856865|40857158 hsa-miR-6862-3p 1 0 0
chr15:40856865|40857158 hsa-miR-6801-3p 1 1 0
chr15:40856865|40857158 hsa-miR-6810-3p 0 1 0
chr15:40856865|40857158 hsa-miR-6775-3p 0 1 0
chr15:40856865|40857158 hsa-miR-10392-3p 1 0 0
chr15:40856865|40857158 hsa-miR-6511b-3p 1 1 0
chr15:40856865|40857158 hsa-miR-6512-3p 0 1 0
chr15:40856865|40857158 hsa-miR-6751-3p 0 1 0
chr15:40856865|40857158 hsa-miR-7114-3p 1 0 0
chr15:40856865|40857158 hsa-miR-330-5p 1 1 0
chr15:40856865|40857158 hsa-miR-4701-5p 1 0 0
chr15:40856865|40857158 hsa-miR-4653-5p 0 1 0
chr15:40856865|40857158 hsa-miR-4999-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr15:40856865|40857158
ORF Type ORF1
Protein Length 30
Nucleotide Length 93
Protein Sequence MGNRQESGSKVFPSPGLCLGKQEAGPGESR
Nucleotide Sequence CTGGGAAACAGGCAAGAGTCTGGTTCCAAAGTTTTTCCCAGCCCAGGCCTCTGCCTTGGCAAGCAGGAAGCAGGGCCAGGTGAGAGCCGGTGA
CircID chr15:40856865|40857158
ORF Type ORF2
Protein Length 50
Nucleotide Length 153
Protein Sequence MVSEAQWAWETGKSLVPKFFPAQASALASRKQGQVRAGETQAQRGRVVWL
Nucleotide Sequence CTGGTCTCTGAGGCACAGTGGGCCTGGGAAACAGGCAAGAGTCTGGTTCCAAAGTTTTTCCCAGCCCAGGCCTCTGCCTTGGCAAGCAGGAAGCAGGGCCAGGTGAGAGCCGGTGAGACCCAGGCTCAGAGGGGCCGCGTGGTGTGGTTATAG
CircID chr15:40856865|40857158
ORF Type ORF3
Protein Length 44
Nucleotide Length 135
Protein Sequence MRLLQEGLEPWSLRHSGPGKQARVWFQSFSQPRPLPWQAGSRAR
Nucleotide Sequence CTGAGACTTCTCCAAGAGGGGCTGGAGCCCTGGTCTCTGAGGCACAGTGGGCCTGGGAAACAGGCAAGAGTCTGGTTCCAAAGTTTTTCCCAGCCCAGGCCTCTGCCTTGGCAAGCAGGAAGCAGGGCCAGGTGA
CircID chr15:40856865|40857158
ORF Type ORF4
Protein Length 44
Nucleotide Length 135
Protein Sequence MLAKAEAWAGKNFGTRLLPVSQAHCASETRAPAPLGEVSAKLTS
Nucleotide Sequence CTGCTTGCCAAGGCAGAGGCCTGGGCTGGGAAAAACTTTGGAACCAGACTCTTGCCTGTTTCCCAGGCCCACTGTGCCTCAGAGACCAGGGCTCCAGCCCCTCTTGGAGAAGTCTCAGCTAAGCTCACGTCCTGA
CircID chr15:40856865|40857158
ORF Type ORF5
Protein Length 85
Nucleotide Length 255
Protein Sequence MPAPLSPLPRTRSTWSITTPRGPSEPGSHRLSPGPASCLPRQRPGLGKTLEPDSCLFPRPTVPQRPGLQPLLEKSQLSSRPEKAQ
Nucleotide Sequence CTGCCAGCTCCACTGTCTCCACTACCGAGGACACGGAGCACCTGGTCTATAACCACACCACGCGGCCCCTCTGAGCCTGGGTCTCACCGGCTCTCACCTGGCCCTGCTTCCTGCTTGCCAAGGCAGAGGCCTGGGCTGGGAAAAACTTTGGAACCAGACTCTTGCCTGTTTCCCAGGCCCACTGTGCCTCAGAGACCAGGGCTCCAGCCCCTCTTGGAGAAGTCTCAGCTAAGCTCACGTCCTGAGAAAGCTCAA
CircID chr15:40856865|40857158
ORF Type ORF6
Protein Length 53
Nucleotide Length 162
Protein Sequence MSLGLTGSHLALLPACQGRGLGWEKLWNQTLACFPGPLCLRDQGSSPSWRSLS
Nucleotide Sequence CTGAGCCTGGGTCTCACCGGCTCTCACCTGGCCCTGCTTCCTGCTTGCCAAGGCAGAGGCCTGGGCTGGGAAAAACTTTGGAACCAGACTCTTGCCTGTTTCCCAGGCCCACTGTGCCTCAGAGACCAGGGCTCCAGCCCCTCTTGGAGAAGTCTCAGCTAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab