CircRNA Information

General Information
circRNA Basic Information
CircID chr15:40856900|40857059
Strand -
CircType exon
Host Gene ENSG00000166145.13;
Algorism CIRI2;
Sequence CCCTGCCAGCTCCACTGTCTCCACTACCGAGGACACGGAGCACCTGGTCTATAACCACACCACGCGGCCCCTCTGAGCCTGGGTCTCACCGGCTCTCACCTGGCCCTGCTTCCTGCTTGCCAAGGCAGAGGCCTGGGCTGGGAAAAACTTTGGAACCAGA
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr15:40856900|40857059 hsa-miR-31-5p 0 0 1
chr15:40856900|40857059 hsa-miR-31-3p 0 0 1
chr15:40856900|40857059 hsa-miR-182-5p 0 0 1
chr15:40856900|40857059 hsa-miR-182-3p 0 0 1
chr15:40856900|40857059 hsa-miR-484 0 1 1
chr15:40856900|40857059 hsa-miR-561-5p 0 0 1
chr15:40856900|40857059 hsa-miR-561-3p 0 0 1
chr15:40856900|40857059 hsa-miR-125a-3p 0 1 1
chr15:40856900|40857059 hsa-miR-769-5p 0 0 1
chr15:40856900|40857059 hsa-miR-423-5p 1 0 1
chr15:40856900|40857059 hsa-miR-1207-5p 1 0 1
chr15:40856900|40857059 hsa-miR-24 0 0 1
chr15:40856900|40857059 hsa-miR-608 1 0 0
chr15:40856900|40857059 hsa-miR-638 1 0 0
chr15:40856900|40857059 hsa-miR-663a 1 0 0
chr15:40856900|40857059 hsa-miR-762 1 0 0
chr15:40856900|40857059 hsa-miR-764 0 1 0
chr15:40856900|40857059 hsa-miR-1471 1 0 0
chr15:40856900|40857059 hsa-miR-3155a 0 1 0
chr15:40856900|40857059 hsa-miR-3196 1 0 0
chr15:40856900|40857059 hsa-miR-3197 1 0 0
chr15:40856900|40857059 hsa-miR-4298 1 0 0
chr15:40856900|40857059 hsa-miR-3918 0 1 0
chr15:40856900|40857059 hsa-miR-3155b 0 1 0
chr15:40856900|40857059 hsa-miR-4488 1 0 0
chr15:40856900|40857059 hsa-miR-4656 1 0 0
chr15:40856900|40857059 hsa-miR-4669 1 0 0
chr15:40856900|40857059 hsa-miR-4683 1 0 0
chr15:40856900|40857059 hsa-miR-4688 1 0 0
chr15:40856900|40857059 hsa-miR-4710 0 1 0
chr15:40856900|40857059 hsa-miR-4721 1 0 0
chr15:40856900|40857059 hsa-miR-4739 1 0 0
chr15:40856900|40857059 hsa-miR-5194 1 0 0
chr15:40856900|40857059 hsa-miR-6075 1 0 0
chr15:40856900|40857059 hsa-miR-6085 1 0 0
chr15:40856900|40857059 hsa-miR-6132 0 1 0
chr15:40856900|40857059 hsa-miR-6165 0 1 0
chr15:40856900|40857059 hsa-miR-7704 1 0 0
chr15:40856900|40857059 hsa-miR-7977 0 1 0
chr15:40856900|40857059 hsa-miR-8088 0 1 0
chr15:40856900|40857059 hsa-miR-8089 1 0 0
chr15:40856900|40857059 hsa-miR-9899 1 0 0
chr15:40856900|40857059 hsa-miR-12115 0 1 0
chr15:40856900|40857059 hsa-miR-128-1-5p 1 0 0
chr15:40856900|40857059 hsa-miR-4726-3p 1 0 0
chr15:40856900|40857059 hsa-miR-6510-5p 0 1 0
chr15:40856900|40857059 hsa-miR-6089 1 0 0
chr15:40856900|40857059 hsa-miR-4695-5p 1 0 0
chr15:40856900|40857059 hsa-miR-4722-5p 0 1 0
chr15:40856900|40857059 hsa-miR-6806-5p 0 1 0
chr15:40856900|40857059 hsa-miR-185-3p 1 0 0
chr15:40856900|40857059 hsa-miR-6805-5p 1 0 0
chr15:40856900|40857059 hsa-miR-6874-5p 0 1 0
chr15:40856900|40857059 hsa-miR-6821-5p 1 0 0
chr15:40856900|40857059 hsa-miR-7855-5p 1 0 0
chr15:40856900|40857059 hsa-miR-5008-5p 1 0 0
chr15:40856900|40857059 hsa-miR-615-5p 1 0 0
chr15:40856900|40857059 hsa-miR-6786-5p 1 0 0
chr15:40856900|40857059 hsa-miR-1226-5p 1 0 0
chr15:40856900|40857059 hsa-miR-4640-5p 1 1 0
chr15:40856900|40857059 hsa-miR-5001-3p 0 1 0
chr15:40856900|40857059 hsa-miR-6877-5p 1 0 0
chr15:40856900|40857059 hsa-miR-6895-5p 0 1 0
chr15:40856900|40857059 hsa-miR-654-5p 1 0 0
chr15:40856900|40857059 hsa-miR-3605-3p 0 1 0
chr15:40856900|40857059 hsa-miR-4650-5p 0 1 0
chr15:40856900|40857059 hsa-miR-4763-3p 1 1 0
chr15:40856900|40857059 hsa-miR-6893-5p 1 0 0
chr15:40856900|40857059 hsa-miR-6743-5p 1 0 0
chr15:40856900|40857059 hsa-miR-6813-5p 1 0 0
chr15:40856900|40857059 hsa-miR-6722-3p 1 0 0
chr15:40856900|40857059 hsa-miR-6779-5p 1 0 0
chr15:40856900|40857059 hsa-miR-6808-5p 1 1 0
chr15:40856900|40857059 hsa-miR-6875-5p 1 0 0
chr15:40856900|40857059 hsa-miR-6836-5p 1 1 0
chr15:40856900|40857059 hsa-miR-10396a-5p 1 0 0
chr15:40856900|40857059 hsa-miR-1909-3p 1 0 0
chr15:40856900|40857059 hsa-miR-328-5p 1 0 0
chr15:40856900|40857059 hsa-miR-4685-5p 1 0 0
chr15:40856900|40857059 hsa-miR-4726-5p 0 1 0
chr15:40856900|40857059 hsa-miR-6511b-5p 1 0 0
chr15:40856900|40857059 hsa-miR-1914-3p 1 0 0
chr15:40856900|40857059 hsa-miR-6877-3p 0 1 0
chr15:40856900|40857059 hsa-miR-3184-5p 1 0 0
chr15:40856900|40857059 hsa-miR-6762-5p 1 1 0
chr15:40856900|40857059 hsa-miR-4757-5p 0 1 0
chr15:40856900|40857059 hsa-miR-6744-3p 0 1 0
chr15:40856900|40857059 hsa-miR-4690-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr15:40856900|40857059
ORF Type ORF1
Protein Length 29
Nucleotide Length 87
Protein Sequence MSLGLTGSHLALLPACQGRGLGWEKLWNQ
Nucleotide Sequence CTGAGCCTGGGTCTCACCGGCTCTCACCTGGCCCTGCTTCCTGCTTGCCAAGGCAGAGGCCTGGGCTGGGAAAAACTTTGGAACCAG
CircID chr15:40856900|40857059
ORF Type ORF2
Protein Length 52
Nucleotide Length 156
Protein Sequence LPAPLSPLPRTRSTWSITTPRGPSEPGSHRLSPGPASCLPRQRPGLGKTLEP
Nucleotide Sequence CTGCCAGCTCCACTGTCTCCACTACCGAGGACACGGAGCACCTGGTCTATAACCACACCACGCGGCCCCTCTGAGCCTGGGTCTCACCGGCTCTCACCTGGCCCTGCTTCCTGCTTGCCAAGGCAGAGGCCTGGGCTGGGAAAAACTTTGGAACCA
CircID chr15:40856900|40857059
ORF Type ORF3
Protein Length 36
Nucleotide Length 111
Protein Sequence LVPKFFPAQASALASRKQGQVRAGETQAQRGRVVWL
Nucleotide Sequence CTGGTTCCAAAGTTTTTCCCAGCCCAGGCCTCTGCCTTGGCAAGCAGGAAGCAGGGCCAGGTGAGAGCCGGTGAGACCCAGGCTCAGAGGGGCCGCGTGGTGTGGTTATAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab