CircRNA Information

General Information
circRNA Basic Information
CircID chr15:40857061|40857209
Strand -
CircType exon
Host Gene ENSG00000166145.13;
Algorism CIRI2;
Sequence TCTTGCCTGTTTCCCAGGCCCACTGTGCCTCAGAGACCAGGGCTCCAGCCCCTCTTGGAGAAGTCTCAGCTAAGCTCACGTCCTGAGAAAGCTCAAAGGTTTGGAAGGAGCAGAAAACCCTTGGGCCAGAAGTACCAGACTAGATGGAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr15:40857061|40857209 hsa-miR-31-5p 0 0 1
chr15:40857061|40857209 hsa-miR-31-3p 0 0 1
chr15:40857061|40857209 hsa-miR-554 0 0 1
chr15:40857061|40857209 hsa-miR-593-5p 0 0 1
chr15:40857061|40857209 hsa-miR-593-3p 0 0 1
chr15:40857061|40857209 hsa-miR-661 0 0 1
chr15:40857061|40857209 hsa-miR-1266-5p 0 0 1
chr15:40857061|40857209 hsa-miR-1266-3p 0 0 1
chr15:40857061|40857209 hsa-miR-1827 0 0 1
chr15:40857061|40857209 hsa-miR-423-5p 0 1 1
chr15:40857061|40857209 hsa-miR-767-3p 0 0 1
chr15:40857061|40857209 hsa-miR-515-5p 0 0 1
chr15:40857061|40857209 hsa-miR-1233 0 0 1
chr15:40857061|40857209 hsa-miR-128 0 0 1
chr15:40857061|40857209 hsa-miR-544 0 0 1
chr15:40857061|40857209 hsa-miR-762 1 1 0
chr15:40857061|40857209 hsa-miR-2861 0 1 0
chr15:40857061|40857209 hsa-miR-3197 1 0 0
chr15:40857061|40857209 hsa-miR-4268 1 0 0
chr15:40857061|40857209 hsa-miR-3652 0 1 0
chr15:40857061|40857209 hsa-miR-3921 0 1 0
chr15:40857061|40857209 hsa-miR-4538 1 0 0
chr15:40857061|40857209 hsa-miR-4656 1 0 0
chr15:40857061|40857209 hsa-miR-4674 1 0 0
chr15:40857061|40857209 hsa-miR-5787 1 0 0
chr15:40857061|40857209 hsa-miR-6085 0 1 0
chr15:40857061|40857209 hsa-miR-7974 1 0 0
chr15:40857061|40857209 hsa-miR-8077 1 0 0
chr15:40857061|40857209 hsa-miR-8086 1 0 0
chr15:40857061|40857209 hsa-miR-8089 1 0 0
chr15:40857061|40857209 hsa-miR-12119 0 1 0
chr15:40857061|40857209 hsa-miR-150-3p 1 0 0
chr15:40857061|40857209 hsa-miR-18a-3p 1 0 0
chr15:40857061|40857209 hsa-miR-6765-5p 1 0 0
chr15:40857061|40857209 hsa-miR-1233-3p 0 1 0
chr15:40857061|40857209 hsa-miR-3622a-5p 1 0 0
chr15:40857061|40857209 hsa-miR-7160-5p 1 0 0
chr15:40857061|40857209 hsa-miR-27b-5p 1 1 0
chr15:40857061|40857209 hsa-miR-3663-5p 0 1 0
chr15:40857061|40857209 hsa-miR-185-3p 1 1 0
chr15:40857061|40857209 hsa-miR-5008-5p 1 0 0
chr15:40857061|40857209 hsa-miR-6740-3p 0 1 0
chr15:40857061|40857209 hsa-miR-6786-5p 1 0 0
chr15:40857061|40857209 hsa-miR-3191-5p 1 0 0
chr15:40857061|40857209 hsa-miR-3677-3p 1 0 0
chr15:40857061|40857209 hsa-miR-6749-5p 1 0 0
chr15:40857061|40857209 hsa-miR-194-3p 0 1 0
chr15:40857061|40857209 hsa-miR-6814-5p 1 1 0
chr15:40857061|40857209 hsa-miR-216a-3p 1 1 0
chr15:40857061|40857209 hsa-miR-328-3p 1 0 0
chr15:40857061|40857209 hsa-miR-6779-3p 0 1 0
chr15:40857061|40857209 hsa-miR-6839-3p 0 1 0
chr15:40857061|40857209 hsa-miR-4763-3p 1 0 0
chr15:40857061|40857209 hsa-miR-6813-5p 1 1 0
chr15:40857061|40857209 hsa-miR-7107-5p 0 1 0
chr15:40857061|40857209 hsa-miR-3620-5p 1 0 0
chr15:40857061|40857209 hsa-miR-328-5p 1 0 0
chr15:40857061|40857209 hsa-miR-6846-5p 1 0 0
chr15:40857061|40857209 hsa-miR-6848-5p 1 0 0
chr15:40857061|40857209 hsa-miR-939-5p 1 0 0
chr15:40857061|40857209 hsa-miR-6773-5p 1 0 0
chr15:40857061|40857209 hsa-miR-3184-5p 0 1 0
chr15:40857061|40857209 hsa-miR-6724-5p 1 0 0
chr15:40857061|40857209 hsa-miR-6848-3p 0 1 0
chr15:40857061|40857209 hsa-miR-6864-3p 0 1 0
chr15:40857061|40857209 hsa-miR-519e-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr15:40857061|40857209
ORF Type ORF1
Protein Length 47
Nucleotide Length 141
Protein Sequence MFPRPTVPQRPGLQPLLEKSQLSSRPEKAQRFGRSRKPLGQKYQTRW
Nucleotide Sequence CTGTTTCCCAGGCCCACTGTGCCTCAGAGACCAGGGCTCCAGCCCCTCTTGGAGAAGTCTCAGCTAAGCTCACGTCCTGAGAAAGCTCAAAGGTTTGGAAGGAGCAGAAAACCCTTGGGCCAGAAGTACCAGACTAGATGG
CircID chr15:40857061|40857209
ORF Type ORF2
Protein Length 27
Nucleotide Length 84
Protein Sequence LPVSQAHCASETRAPAPLGEVSAKLTS
Nucleotide Sequence TTGCCTGTTTCCCAGGCCCACTGTGCCTCAGAGACCAGGGCTCCAGCCCCTCTTGGAGAAGTCTCAGCTAAGCTCACGTCCTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab