CircRNA Information

General Information
circRNA Basic Information
CircID chr15:40857168|40857390
Strand +
CircType exon
Host Gene ENSG00000166145.13;
Algorism CIRI2;
Sequence AGGGAAGTCCTTCCTCCCAGCCCTGGGCGCACAGCATGGAAGAGGAGCTCGGGAGGACAGGGTTGGGGCCTCCAGGGTCTGACACCACCCCACTCCTCTTCCTAGCACCATGGGGTAGGGACAGGCAGCTTTGAACAGAGGAAACAAAACTCCAACTTCCTCCAAACTCCTATGCAGGCAGGTCCATCTAGTCTGGTACTTCTGGCCCAAGGGTTTTCTGCTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr15:40857168|40857390 hsa-miR-22-5p 0 0 1
chr15:40857168|40857390 hsa-miR-22-3p 0 0 1
chr15:40857168|40857390 hsa-miR-10a-5p 0 0 1
chr15:40857168|40857390 hsa-miR-10a-3p 0 0 1
chr15:40857168|40857390 hsa-miR-10b-5p 0 0 1
chr15:40857168|40857390 hsa-miR-10b-3p 0 0 1
chr15:40857168|40857390 hsa-miR-320a-5p 0 0 1
chr15:40857168|40857390 hsa-miR-320a-3p 0 0 1
chr15:40857168|40857390 hsa-miR-492 0 1 1
chr15:40857168|40857390 hsa-miR-504-5p 0 0 1
chr15:40857168|40857390 hsa-miR-504-3p 0 0 1
chr15:40857168|40857390 hsa-miR-608 1 1 1
chr15:40857168|40857390 hsa-miR-617 0 0 1
chr15:40857168|40857390 hsa-miR-635 0 0 1
chr15:40857168|40857390 hsa-miR-650 0 0 1
chr15:40857168|40857390 hsa-miR-765 0 0 1
chr15:40857168|40857390 hsa-miR-933 0 0 1
chr15:40857168|40857390 hsa-miR-1236-5p 0 0 1
chr15:40857168|40857390 hsa-miR-1236-3p 0 0 1
chr15:40857168|40857390 hsa-miR-1238-5p 0 0 1
chr15:40857168|40857390 hsa-miR-1238-3p 0 0 1
chr15:40857168|40857390 hsa-miR-1293 0 0 1
chr15:40857168|40857390 hsa-miR-28-3p 0 1 1
chr15:40857168|40857390 hsa-miR-339-5p 0 1 1
chr15:40857168|40857390 hsa-miR-330-3p 0 0 1
chr15:40857168|40857390 hsa-miR-342-5p 0 0 1
chr15:40857168|40857390 hsa-miR-320b 0 0 1
chr15:40857168|40857390 hsa-miR-320c 0 0 1
chr15:40857168|40857390 hsa-miR-320d 0 0 1
chr15:40857168|40857390 hsa-miR-153 0 0 1
chr15:40857168|40857390 hsa-miR-768-5p 0 0 1
chr15:40857168|40857390 hsa-miR-762 0 1 0
chr15:40857168|40857390 hsa-miR-3193 1 1 0
chr15:40857168|40857390 hsa-miR-4308 0 1 0
chr15:40857168|40857390 hsa-miR-4254 0 1 0
chr15:40857168|40857390 hsa-miR-4327 1 0 0
chr15:40857168|40857390 hsa-miR-4268 0 1 0
chr15:40857168|40857390 hsa-miR-4481 0 1 0
chr15:40857168|40857390 hsa-miR-4498 0 1 0
chr15:40857168|40857390 hsa-miR-4535 0 1 0
chr15:40857168|40857390 hsa-miR-4651 0 1 0
chr15:40857168|40857390 hsa-miR-5194 1 0 0
chr15:40857168|40857390 hsa-miR-5787 0 1 0
chr15:40857168|40857390 hsa-miR-8054 0 1 0
chr15:40857168|40857390 hsa-miR-4433b-3p 1 1 0
chr15:40857168|40857390 hsa-miR-4747-3p 1 0 0
chr15:40857168|40857390 hsa-miR-214-5p 0 1 0
chr15:40857168|40857390 hsa-miR-7106-5p 0 1 0
chr15:40857168|40857390 hsa-miR-6881-3p 0 1 0
chr15:40857168|40857390 hsa-miR-766-5p 1 1 0
chr15:40857168|40857390 hsa-miR-7847-3p 1 0 0
chr15:40857168|40857390 hsa-miR-4653-3p 1 0 0
chr15:40857168|40857390 hsa-miR-6742-5p 0 1 0
chr15:40857168|40857390 hsa-miR-6871-5p 1 1 0
chr15:40857168|40857390 hsa-miR-4725-5p 0 1 0
chr15:40857168|40857390 hsa-miR-30b-3p 0 1 0
chr15:40857168|40857390 hsa-miR-6882-3p 0 1 0
chr15:40857168|40857390 hsa-miR-1229-5p 1 0 0
chr15:40857168|40857390 hsa-miR-4640-5p 1 1 0
chr15:40857168|40857390 hsa-miR-6514-3p 0 1 0
chr15:40857168|40857390 hsa-miR-296-3p 0 1 0
chr15:40857168|40857390 hsa-miR-6749-5p 1 0 0
chr15:40857168|40857390 hsa-miR-4446-3p 0 1 0
chr15:40857168|40857390 hsa-miR-149-3p 1 0 0
chr15:40857168|40857390 hsa-miR-6781-5p 1 0 0
chr15:40857168|40857390 hsa-miR-6877-5p 1 0 0
chr15:40857168|40857390 hsa-miR-3189-3p 0 1 0
chr15:40857168|40857390 hsa-miR-3120-5p 0 1 0
chr15:40857168|40857390 hsa-miR-7106-3p 1 0 0
chr15:40857168|40857390 hsa-miR-6793-3p 0 1 0
chr15:40857168|40857390 hsa-miR-503-3p 1 0 0
chr15:40857168|40857390 hsa-miR-1296-3p 0 1 0
chr15:40857168|40857390 hsa-miR-6748-3p 0 1 0
chr15:40857168|40857390 hsa-miR-6732-3p 0 1 0
chr15:40857168|40857390 hsa-miR-3162-3p 0 1 0
chr15:40857168|40857390 hsa-miR-5585-5p 0 1 0
chr15:40857168|40857390 hsa-miR-1273h-5p 0 1 0
chr15:40857168|40857390 hsa-miR-6737-5p 1 1 0
chr15:40857168|40857390 hsa-miR-6819-5p 1 1 0
chr15:40857168|40857390 hsa-miR-6774-5p 1 1 0
chr15:40857168|40857390 hsa-miR-6779-5p 0 1 0
chr15:40857168|40857390 hsa-miR-6780a-5p 0 1 0
chr15:40857168|40857390 hsa-miR-3689a-3p 0 1 0
chr15:40857168|40857390 hsa-miR-4685-5p 0 1 0
chr15:40857168|40857390 hsa-miR-4726-5p 1 1 0
chr15:40857168|40857390 hsa-miR-3199 1 0 0
chr15:40857168|40857390 hsa-miR-5008-3p 1 0 0
chr15:40857168|40857390 hsa-miR-6773-5p 1 0 0
chr15:40857168|40857390 hsa-miR-6855-5p 1 0 0
chr15:40857168|40857390 hsa-miR-4646-5p 0 1 0
chr15:40857168|40857390 hsa-miR-4716-3p 1 0 0
chr15:40857168|40857390 hsa-miR-6724-5p 1 0 0
chr15:40857168|40857390 hsa-miR-6791-5p 1 0 0
chr15:40857168|40857390 hsa-miR-6753-3p 1 0 0
chr15:40857168|40857390 hsa-miR-6837-5p 0 1 0
chr15:40857168|40857390 hsa-miR-3059-5p 1 0 0
chr15:40857168|40857390 hsa-miR-6764-5p 0 1 0
chr15:40857168|40857390 hsa-miR-5699-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr15:40857168|40857390
ORF Type ORF1
Protein Length 31
Nucleotide Length 93
Protein Sequence MNRGNKTPTSSKLLCRQVHLVWYFWPKGFLL
Nucleotide Sequence TTGAACAGAGGAAACAAAACTCCAACTTCCTCCAAACTCCTATGCAGGCAGGTCCATCTAGTCTGGTACTTCTGGCCCAAGGGTTTTCTGCTC
CircID chr15:40857168|40857390
ORF Type ORF2
Protein Length 32
Nucleotide Length 99
Protein Sequence MEEELGRTGLGPPGSDTTPLLFLAPWGRDRQL
Nucleotide Sequence ATGGAAGAGGAGCTCGGGAGGACAGGGTTGGGGCCTCCAGGGTCTGACACCACCCCACTCCTCTTCCTAGCACCATGGGGTAGGGACAGGCAGCTTTGA
CircID chr15:40857168|40857390
ORF Type ORF3
Protein Length 41
Nucleotide Length 123
Protein Sequence MSLPHGARKRSGVVSDPGGPNPVLPSSSSMLCAQGWEEGLP
Nucleotide Sequence CTGTCCCTACCCCATGGTGCTAGGAAGAGGAGTGGGGTGGTGTCAGACCCTGGAGGCCCCAACCCTGTCCTCCCGAGCTCCTCTTCCATGCTGTGCGCCCAGGGCTGGGAGGAAGGACTTCCC
CircID chr15:40857168|40857390
ORF Type ORF4
Protein Length 70
Nucleotide Length 210
Protein Sequence MGQKYQTRWTCLHRSLEEVGVLFPLFKAACPYPMVLGRGVGWCQTLEAPTLSSRAPLPCCAPRAGRKDFP
Nucleotide Sequence TTGGGCCAGAAGTACCAGACTAGATGGACCTGCCTGCATAGGAGTTTGGAGGAAGTTGGAGTTTTGTTTCCTCTGTTCAAAGCTGCCTGTCCCTACCCCATGGTGCTAGGAAGAGGAGTGGGGTGGTGTCAGACCCTGGAGGCCCCAACCCTGTCCTCCCGAGCTCCTCTTCCATGCTGTGCGCCCAGGGCTGGGAGGAAGGACTTCCCT
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab