CircRNA Information

General Information
circRNA Basic Information
CircID chr15:41846695|41846817
Strand -
CircType exon
Host Gene ENSG00000168970.19;
Algorism CIRI2;
Sequence CAGCTGACACCCTCGGAGCCCCACCTGTGCCTGCTGGATGTTGGCTACCTCATCAATACCAGCTGCCTGCCCCTCCTGCAGCCCACTCGGGACGTGGACCTCATCCTGTCATTGGACTACAAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr15:41846695|41846817 hsa-let-7b-5p 0 0 1
chr15:41846695|41846817 hsa-let-7b-3p 0 0 1
chr15:41846695|41846817 hsa-let-7c-5p 0 0 1
chr15:41846695|41846817 hsa-let-7c-3p 0 0 1
chr15:41846695|41846817 hsa-let-7d-5p 0 0 1
chr15:41846695|41846817 hsa-let-7d-3p 0 0 1
chr15:41846695|41846817 hsa-let-7e-5p 0 0 1
chr15:41846695|41846817 hsa-let-7e-3p 0 0 1
chr15:41846695|41846817 hsa-miR-98-5p 0 0 1
chr15:41846695|41846817 hsa-miR-98-3p 0 0 1
chr15:41846695|41846817 hsa-miR-214-5p 0 0 1
chr15:41846695|41846817 hsa-miR-214-3p 0 0 1
chr15:41846695|41846817 hsa-let-7g-5p 0 0 1
chr15:41846695|41846817 hsa-let-7g-3p 0 0 1
chr15:41846695|41846817 hsa-let-7i-5p 0 0 1
chr15:41846695|41846817 hsa-let-7i-3p 0 0 1
chr15:41846695|41846817 hsa-miR-202-5p 0 0 1
chr15:41846695|41846817 hsa-miR-202-3p 0 0 1
chr15:41846695|41846817 hsa-miR-552-5p 0 0 1
chr15:41846695|41846817 hsa-miR-552-3p 0 0 1
chr15:41846695|41846817 hsa-miR-1205 0 0 1
chr15:41846695|41846817 hsa-miR-1286 0 0 1
chr15:41846695|41846817 hsa-miR-1255a 0 0 1
chr15:41846695|41846817 hsa-miR-486-3p 1 0 1
chr15:41846695|41846817 hsa-miR-423-5p 1 1 1
chr15:41846695|41846817 hsa-miR-1207-3p 0 0 1
chr15:41846695|41846817 hsa-miR-338-3p 0 0 1
chr15:41846695|41846817 hsa-miR-1255b 0 0 1
chr15:41846695|41846817 hsa-let-7a 0 0 1
chr15:41846695|41846817 hsa-let-7f 0 0 1
chr15:41846695|41846817 hsa-miR-663a 1 0 0
chr15:41846695|41846817 hsa-miR-762 1 0 0
chr15:41846695|41846817 hsa-miR-3141 1 0 0
chr15:41846695|41846817 hsa-miR-3170 1 0 0
chr15:41846695|41846817 hsa-miR-3197 1 0 0
chr15:41846695|41846817 hsa-miR-4322 1 0 0
chr15:41846695|41846817 hsa-miR-4257 1 0 0
chr15:41846695|41846817 hsa-miR-4269 0 1 0
chr15:41846695|41846817 hsa-miR-3937 1 1 0
chr15:41846695|41846817 hsa-miR-4449 1 1 0
chr15:41846695|41846817 hsa-miR-4481 0 1 0
chr15:41846695|41846817 hsa-miR-4498 1 0 0
chr15:41846695|41846817 hsa-miR-4530 0 1 0
chr15:41846695|41846817 hsa-miR-4651 1 0 0
chr15:41846695|41846817 hsa-miR-4656 1 0 0
chr15:41846695|41846817 hsa-miR-4674 1 0 0
chr15:41846695|41846817 hsa-miR-4688 1 1 0
chr15:41846695|41846817 hsa-miR-4692 0 1 0
chr15:41846695|41846817 hsa-miR-4741 1 1 0
chr15:41846695|41846817 hsa-miR-5090 1 0 0
chr15:41846695|41846817 hsa-miR-5194 1 0 0
chr15:41846695|41846817 hsa-miR-5787 1 0 0
chr15:41846695|41846817 hsa-miR-7704 1 0 0
chr15:41846695|41846817 hsa-miR-8072 1 0 0
chr15:41846695|41846817 hsa-miR-323a-5p 1 0 0
chr15:41846695|41846817 hsa-miR-4687-3p 1 0 0
chr15:41846695|41846817 hsa-miR-125a-3p 1 0 0
chr15:41846695|41846817 hsa-miR-6804-5p 0 1 0
chr15:41846695|41846817 hsa-miR-3622a-5p 1 0 0
chr15:41846695|41846817 hsa-miR-3934-5p 1 0 0
chr15:41846695|41846817 hsa-miR-1227-5p 1 0 0
chr15:41846695|41846817 hsa-miR-4695-5p 1 0 0
chr15:41846695|41846817 hsa-miR-4722-5p 1 1 0
chr15:41846695|41846817 hsa-miR-6806-5p 1 0 0
chr15:41846695|41846817 hsa-miR-6721-5p 1 1 0
chr15:41846695|41846817 hsa-miR-6742-5p 1 0 0
chr15:41846695|41846817 hsa-miR-3151-5p 1 0 0
chr15:41846695|41846817 hsa-miR-3180-3p 1 0 0
chr15:41846695|41846817 hsa-miR-6793-5p 1 0 0
chr15:41846695|41846817 hsa-miR-6829-5p 1 1 0
chr15:41846695|41846817 hsa-miR-6798-5p 1 0 0
chr15:41846695|41846817 hsa-miR-6782-5p 1 0 0
chr15:41846695|41846817 hsa-miR-615-5p 1 0 0
chr15:41846695|41846817 hsa-miR-6786-5p 1 0 0
chr15:41846695|41846817 hsa-miR-4640-5p 1 0 0
chr15:41846695|41846817 hsa-miR-1228-5p 1 0 0
chr15:41846695|41846817 hsa-miR-4690-5p 1 1 0
chr15:41846695|41846817 hsa-miR-149-3p 1 0 0
chr15:41846695|41846817 hsa-let-7f-5p 0 1 0
chr15:41846695|41846817 hsa-miR-744-5p 1 0 0
chr15:41846695|41846817 hsa-miR-1296-3p 1 0 0
chr15:41846695|41846817 hsa-miR-4283 1 1 0
chr15:41846695|41846817 hsa-miR-1207-5p 1 0 0
chr15:41846695|41846817 hsa-miR-4763-3p 1 0 0
chr15:41846695|41846817 hsa-miR-6816-5p 1 0 0
chr15:41846695|41846817 hsa-miR-6726-5p 1 0 0
chr15:41846695|41846817 hsa-miR-6743-5p 1 1 0
chr15:41846695|41846817 hsa-miR-6756-5p 1 1 0
chr15:41846695|41846817 hsa-miR-6815-5p 1 0 0
chr15:41846695|41846817 hsa-miR-6851-5p 1 0 0
chr15:41846695|41846817 hsa-miR-11181-3p 1 0 0
chr15:41846695|41846817 hsa-miR-6722-3p 1 0 0
chr15:41846695|41846817 hsa-miR-6797-5p 1 0 0
chr15:41846695|41846817 hsa-miR-3620-5p 1 1 0
chr15:41846695|41846817 hsa-miR-4728-5p 1 1 0
chr15:41846695|41846817 hsa-miR-6780b-5p 1 0 0
chr15:41846695|41846817 hsa-miR-10396a-5p 1 0 0
chr15:41846695|41846817 hsa-miR-10396b-5p 1 0 0
chr15:41846695|41846817 hsa-miR-328-5p 1 0 0
chr15:41846695|41846817 hsa-miR-449c-5p 1 0 0
chr15:41846695|41846817 hsa-miR-4632-5p 1 0 0
chr15:41846695|41846817 hsa-miR-4725-3p 1 0 0
chr15:41846695|41846817 hsa-miR-4745-5p 1 1 0
chr15:41846695|41846817 hsa-miR-4749-5p 1 0 0
chr15:41846695|41846817 hsa-miR-6795-5p 1 0 0
chr15:41846695|41846817 hsa-miR-6846-5p 1 0 0
chr15:41846695|41846817 hsa-miR-6848-5p 1 0 0
chr15:41846695|41846817 hsa-miR-939-5p 1 0 0
chr15:41846695|41846817 hsa-miR-4758-5p 1 1 0
chr15:41846695|41846817 hsa-miR-6511b-5p 1 1 0
chr15:41846695|41846817 hsa-miR-3940-5p 1 0 0
chr15:41846695|41846817 hsa-miR-1914-3p 1 0 0
chr15:41846695|41846817 hsa-miR-6855-5p 1 0 0
chr15:41846695|41846817 hsa-miR-6891-5p 1 0 0
chr15:41846695|41846817 hsa-miR-10400-3p 1 0 0
chr15:41846695|41846817 hsa-miR-3619-5p 1 1 0
chr15:41846695|41846817 hsa-miR-6715b-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr15:41846695|41846817
ORF Type ORF1
Protein Length 40
Nucleotide Length 120
Protein Sequence MTPSEPHLCLLDVGYLINTSCLPLLQPTRDVDLILSLDYN
Nucleotide Sequence CTGACACCCTCGGAGCCCCACCTGTGCCTGCTGGATGTTGGCTACCTCATCAATACCAGCTGCCTGCCCCTCCTGCAGCCCACTCGGGACGTGGACCTCATCCTGTCATTGGACTACAAC
CircID chr15:41846695|41846817
ORF Type ORF2
Protein Length 28
Nucleotide Length 84
Protein Sequence MLATSSIPAACPSCSPLGTWTSSCHWTT
Nucleotide Sequence ATGTTGGCTACCTCATCAATACCAGCTGCCTGCCCCTCCTGCAGCCCACTCGGGACGTGGACCTCATCCTGTCATTGGACTACA
CircID chr15:41846695|41846817
ORF Type ORF3
Protein Length 27
Nucleotide Length 81
Protein Sequence MQEGQAAGIDEVANIQQAQVGLRGCQL
Nucleotide Sequence CTGCAGGAGGGGCAGGCAGCTGGTATTGATGAGGTAGCCAACATCCAGCAGGCACAGGTGGGGCTCCGAGGGTGTCAGCTG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab