CircRNA Information

General Information
circRNA Basic Information
CircID chr15:43191395|43191594
Strand +
CircType exon
Host Gene ENSG00000166946.12;
Algorism CIRI2;
Sequence ATCCGAATTTTCTTCAGGCAGGCTTTGGATGCTCTCACCAGCGCAAGGCATGGGATTATGAGCTCTTGATCGTCCTCTGACCAATACAAGTCCTGATTGCTGGGAAACCCCAACACATCATCCTCATGATTGTGGTTGTCAGAGTTGTTCTCCTCAGTATCATTCAAGAGGCCAGAGTAAGGGTCACATTCTTCCACAGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr15:43191395|43191594 hsa-miR-335-5p 0 0 1
chr15:43191395|43191594 hsa-miR-335-3p 0 0 1
chr15:43191395|43191594 hsa-miR-504-5p 0 0 1
chr15:43191395|43191594 hsa-miR-504-3p 0 0 1
chr15:43191395|43191594 hsa-miR-596 1 0 1
chr15:43191395|43191594 hsa-miR-643 0 0 1
chr15:43191395|43191594 hsa-miR-532-5p 0 1 1
chr15:43191395|43191594 hsa-miR-7 0 0 1
chr15:43191395|43191594 hsa-miR-138 0 0 1
chr15:43191395|43191594 hsa-miR-1201 0 0 1
chr15:43191395|43191594 hsa-miR-549 0 0 1
chr15:43191395|43191594 hsa-miR-1185 0 0 1
chr15:43191395|43191594 hsa-miR-760 1 0 0
chr15:43191395|43191594 hsa-miR-663b 1 0 0
chr15:43191395|43191594 hsa-miR-3170 0 1 0
chr15:43191395|43191594 hsa-miR-4431 0 1 0
chr15:43191395|43191594 hsa-miR-4491 0 1 0
chr15:43191395|43191594 hsa-miR-8066 0 1 0
chr15:43191395|43191594 hsa-miR-138-5p 0 1 0
chr15:43191395|43191594 hsa-miR-7114-5p 0 1 0
chr15:43191395|43191594 hsa-miR-7855-5p 0 1 0
chr15:43191395|43191594 hsa-miR-1226-5p 1 1 0
chr15:43191395|43191594 hsa-miR-3127-5p 1 0 0
chr15:43191395|43191594 hsa-miR-6847-5p 1 1 0
chr15:43191395|43191594 hsa-miR-6878-3p 0 1 0
chr15:43191395|43191594 hsa-miR-3619-3p 1 0 0
chr15:43191395|43191594 hsa-miR-6801-5p 1 1 0
chr15:43191395|43191594 hsa-miR-6872-3p 0 1 0
chr15:43191395|43191594 hsa-miR-28-5p 0 1 0
chr15:43191395|43191594 hsa-miR-3670 0 1 0
chr15:43191395|43191594 hsa-miR-6759-3p 0 1 0
chr15:43191395|43191594 hsa-miR-514a-5p 1 1 0
chr15:43191395|43191594 hsa-miR-4763-3p 1 0 0
chr15:43191395|43191594 hsa-miR-4685-5p 1 0 0
chr15:43191395|43191594 hsa-miR-6736-5p 1 0 0
chr15:43191395|43191594 hsa-miR-6855-5p 0 1 0
chr15:43191395|43191594 hsa-miR-6718-5p 1 0 0
chr15:43191395|43191594 hsa-miR-6744-3p 0 1 0
chr15:43191395|43191594 hsa-miR-3922-3p 0 1 0
chr15:43191395|43191594 hsa-miR-10522-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr15:43191395|43191594
ORF Type ORF1
Protein Length 41
Nucleotide Length 123
Protein Sequence MTNTSPDCWETPTHHPHDCGCQSCSPQYHSRGQSKGHILPQ
Nucleotide Sequence CTGACCAATACAAGTCCTGATTGCTGGGAAACCCCAACACATCATCCTCATGATTGTGGTTGTCAGAGTTGTTCTCCTCAGTATCATTCAAGAGGCCAGAGTAAGGGTCACATTCTTCCACAG
CircID chr15:43191395|43191594
ORF Type ORF2
Protein Length 36
Nucleotide Length 108
Protein Sequence MIAGKPQHIILMIVVVRVVLLSIIQEARVRVTFFHS
Nucleotide Sequence CTGATTGCTGGGAAACCCCAACACATCATCCTCATGATTGTGGTTGTCAGAGTTGTTCTCCTCAGTATCATTCAAGAGGCCAGAGTAAGGGTCACATTCTTCCACAGC
CircID chr15:43191395|43191594
ORF Type ORF3
Protein Length 55
Nucleotide Length 165
Protein Sequence MNDTEENNSDNHNHEDDVLGFPSNQDLYWSEDDQELIIPCLALVRASKACLKKIR
Nucleotide Sequence TTGAATGATACTGAGGAGAACAACTCTGACAACCACAATCATGAGGATGATGTGTTGGGGTTTCCCAGCAATCAGGACTTGTATTGGTCAGAGGACGATCAAGAGCTCATAATCCCATGCCTTGCGCTGGTGAGAGCATCCAAAGCCTGCCTGAAGAAAATTCGG
CircID chr15:43191395|43191594
ORF Type ORF4
Protein Length 35
Nucleotide Length 108
Protein Sequence MILRRTTLTTTIMRMMCWGFPAIRTCIGQRTIKSS
Nucleotide Sequence ATGATACTGAGGAGAACAACTCTGACAACCACAATCATGAGGATGATGTGTTGGGGTTTCCCAGCAATCAGGACTTGTATTGGTCAGAGGACGATCAAGAGCTCATAA
CircID chr15:43191395|43191594
ORF Type ORF5
Protein Length 28
Nucleotide Length 84
Protein Sequence MVRGRSRAHNPMPCAGESIQSLPEENSD
Nucleotide Sequence TTGGTCAGAGGACGATCAAGAGCTCATAATCCCATGCCTTGCGCTGGTGAGAGCATCCAAAGCCTGCCTGAAGAAAATTCGGAT
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab