CircRNA Information

General Information
circRNA Basic Information
CircID chr15:44715434|44715701
Strand +
CircType exon
Host Gene ENSG00000166710.16;
Algorism CIRI2;
Sequence CCCACTTAACTATCTTGGGCTGTGACAAAGTCACATGGTTCACACGGCAGGCATACTCATCTTTTTCAGTGGGGGTGAATTCAGTGTAGTACAAGAGATAGAAAGACCAGTCCTTGCTGAAAGACAAGTCTGAATGCTCCACTTTTTCAATTCTCTCTCCATTCTTCAGTAAGTCAACTTCAATGTCGGATGGATGAAACCCAGACACATAGCAATTCAGGAAATTTGACTTTCCATTCTCTGCTGGATGACGTGAGTAAACCTGAAT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr15:44715434|44715701 hsa-miR-134-5p 0 0 1
chr15:44715434|44715701 hsa-miR-134-3p 0 0 1
chr15:44715434|44715701 hsa-miR-185-5p 0 0 1
chr15:44715434|44715701 hsa-miR-185-3p 0 0 1
chr15:44715434|44715701 hsa-miR-511-5p 0 0 1
chr15:44715434|44715701 hsa-miR-511-3p 0 0 1
chr15:44715434|44715701 hsa-miR-496 0 0 1
chr15:44715434|44715701 hsa-miR-545-5p 0 0 1
chr15:44715434|44715701 hsa-miR-545-3p 0 0 1
chr15:44715434|44715701 hsa-miR-573 0 0 1
chr15:44715434|44715701 hsa-miR-598-5p 0 0 1
chr15:44715434|44715701 hsa-miR-598-3p 0 0 1
chr15:44715434|44715701 hsa-miR-629-5p 0 0 1
chr15:44715434|44715701 hsa-miR-629-3p 0 0 1
chr15:44715434|44715701 hsa-miR-643 0 0 1
chr15:44715434|44715701 hsa-miR-922 0 1 1
chr15:44715434|44715701 hsa-miR-1179 0 0 1
chr15:44715434|44715701 hsa-miR-1231 0 0 1
chr15:44715434|44715701 hsa-miR-1200 0 0 1
chr15:44715434|44715701 hsa-miR-302f 0 0 1
chr15:44715434|44715701 hsa-miR-532-5p 0 0 1
chr15:44715434|44715701 hsa-miR-338-3p 0 0 1
chr15:44715434|44715701 hsa-miR-299-5p 0 0 1
chr15:44715434|44715701 hsa-miR-513a-3p 0 0 1
chr15:44715434|44715701 hsa-miR-219-2-3p 0 0 1
chr15:44715434|44715701 hsa-miR-595 1 0 0
chr15:44715434|44715701 hsa-miR-3662 0 1 0
chr15:44715434|44715701 hsa-miR-4530 0 1 0
chr15:44715434|44715701 hsa-miR-3978 0 1 0
chr15:44715434|44715701 hsa-miR-4644 0 1 0
chr15:44715434|44715701 hsa-miR-5685 0 1 0
chr15:44715434|44715701 hsa-miR-5739 1 1 0
chr15:44715434|44715701 hsa-miR-12115 0 1 0
chr15:44715434|44715701 hsa-miR-12117 0 1 0
chr15:44715434|44715701 hsa-miR-6818-3p 1 1 0
chr15:44715434|44715701 hsa-miR-6830-3p 1 1 0
chr15:44715434|44715701 hsa-miR-3925-5p 1 1 0
chr15:44715434|44715701 hsa-miR-574-5p 1 0 0
chr15:44715434|44715701 hsa-miR-6832-5p 0 1 0
chr15:44715434|44715701 hsa-miR-4796-3p 0 1 0
chr15:44715434|44715701 hsa-miR-6839-3p 0 1 0
chr15:44715434|44715701 hsa-miR-6812-5p 1 0 0
chr15:44715434|44715701 hsa-miR-6775-5p 1 0 0
chr15:44715434|44715701 hsa-miR-1271-3p 0 1 0
chr15:44715434|44715701 hsa-miR-6848-3p 1 0 0
chr15:44715434|44715701 hsa-miR-6820-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr15:44715434|44715701
ORF Type ORF1
Protein Length 46
Nucleotide Length 138
Protein Sequence MNAPLFQFSLHSSVSQLQCRMDETQTHSNSGNLTFHSLLDDVSKPE
Nucleotide Sequence CTGAATGCTCCACTTTTTCAATTCTCTCTCCATTCTTCAGTAAGTCAACTTCAATGTCGGATGGATGAAACCCAGACACATAGCAATTCAGGAAATTTGACTTTCCATTCTCTGCTGGATGACGTGAGTAAACCTGAA
CircID chr15:44715434|44715701
ORF Type ORF2
Protein Length 32
Nucleotide Length 99
Protein Sequence MVHTAGILIFFSGGEFSVVQEIERPVLAERQV
Nucleotide Sequence ATGGTTCACACGGCAGGCATACTCATCTTTTTCAGTGGGGGTGAATTCAGTGTAGTACAAGAGATAGAAAGACCAGTCCTTGCTGAAAGACAAGTCTGA
CircID chr15:44715434|44715701
ORF Type ORF3
Protein Length 27
Nucleotide Length 84
Protein Sequence MLKDKSECSTFSILSPFFSKSTSMSDG
Nucleotide Sequence TTGCTGAAAGACAAGTCTGAATGCTCCACTTTTTCAATTCTCTCTCCATTCTTCAGTAAGTCAACTTCAATGTCGGATGGATGA
CircID chr15:44715434|44715701
ORF Type ORF4
Protein Length 73
Nucleotide Length 219
Protein Sequence MNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKW
Nucleotide Sequence CTGAATTGCTATGTGTCTGGGTTTCATCCATCCGACATTGAAGTTGACTTACTGAAGAATGGAGAGAGAATTGAAAAAGTGGAGCATTCAGACTTGTCTTTCAGCAAGGACTGGTCTTTCTATCTCTTGTACTACACTGAATTCACCCCCACTGAAAAAGATGAGTATGCCTGCCGTGTGAACCATGTGACTTTGTCACAGCCCAAGATAGTTAAGTGG
CircID chr15:44715434|44715701
ORF Type ORF5
Protein Length 40
Nucleotide Length 123
Protein Sequence MERELKKWSIQTCLSARTGLSISCTTLNSPPLKKMSMPAV
Nucleotide Sequence ATGGAGAGAGAATTGAAAAAGTGGAGCATTCAGACTTGTCTTTCAGCAAGGACTGGTCTTTCTATCTCTTGTACTACACTGAATTCACCCCCACTGAAAAAGATGAGTATGCCTGCCGTGTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab