CircRNA Information

General Information
circRNA Basic Information
CircID chr15:57072653|57197825
Strand +
CircType exon
Host Gene ENSG00000140262.17;
Algorism find_circ;CIRI2;DCC;
Sequence GTACAATACACGAGATGAAGCAGTTAAATAGCAAAGCAAGACAGAAGGGTCAGAGAATTAAATCTAGTCTCCTGAGACAAGATCTGGGGCTTGGGAGCCCAGCACAGCTATCTTCTTCAGGAAAACCTGGGACAGCATACTATTCATTCTCTGCTACAAGTTCCAGGAGGAGACCACTCCATGACTCTGCAGCGCTTGATCCCTTGCAAGCAAAAAAAGTCAGAAAGGTGCCTCCTGGTTTGCCTTCTTCT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr15:57072653|57197825 hsa-miR-150-5p 0 1 1
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py


circRNA Open Reading Frame (ORF)
CircID chr15:57072653|57197825
ORF Type ORF1
Protein Length 79
Nucleotide Length 237
Protein Sequence MKQLNSKARQKGQRIKSSLLRQDLGLGSPAQLSSSGKPGTAYYSFSATSSRRRPLHDSAALDPLQAKKVRKVPPGLPSS
Nucleotide Sequence ATGAAGCAGTTAAATAGCAAAGCAAGACAGAAGGGTCAGAGAATTAAATCTAGTCTCCTGAGACAAGATCTGGGGCTTGGGAGCCCAGCACAGCTATCTTCTTCAGGAAAACCTGGGACAGCATACTATTCATTCTCTGCTACAAGTTCCAGGAGGAGACCACTCCATGACTCTGCAGCGCTTGATCCCTTGCAAGCAAAAAAAGTCAGAAAGGTGCCTCCTGGTTTGCCTTCTTCT

RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
chr15:57072653|57197825 ELAVL1 0 1 0
chr15:57072653|57197825 SRSF7 0 0 1
chr15:57072653|57197825 NOP58 3 1 1
chr15:57072653|57197825 MSI1 1 0 0
chr15:57072653|57197825 U2AF2 3 5 0
chr15:57072653|57197825 RBM5 0 1 0
chr15:57072653|57197825 DDX54 0 0 3
chr15:57072653|57197825 CELF2 0 2 0
chr15:57072653|57197825 FUS 1 1 0
chr15:57072653|57197825 PRPF8 0 2 0
chr15:57072653|57197825 HNRNPL 1 1 0
chr15:57072653|57197825 TIAL1 0 1 0
chr15:57072653|57197825 DKC1 1 3 1
chr15:57072653|57197825 IGF2BP1 0 0 2
chr15:57072653|57197825 IGF2BP3 0 0 2
chr15:57072653|57197825 IGF2BP2 1 1 3
chr15:57072653|57197825 PTBP1 0 1 2
chr15:57072653|57197825 EIF4A3 2 6 4
chr15:57072653|57197825 AGO2 0 0 2