CircRNA Information

General Information
circRNA Basic Information
CircID chr15:62163612|62163826
Strand +
CircType exon
Host Gene ENSG00000205502.3;
Algorism CIRI2;
Sequence AGAATAAACGTTATTTATTTTTTTATTTATGATACTGCTTTATTGACGTTTTACTTCCTCACCATCCACATTTGTCATCGTCTATTGGTAAAGAAGAAAAAGATAATGACTCCCTGTTCTGTTCACAGGACCCCCATATCTCTTTCCAGACCATTTTTGCATTCCAAGGAAAAATGGGTTGGCTTGGGACTGGGAGAGAAAGGAAGTACACCCAT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr15:62163612|62163826 hsa-miR-150-5p 0 0 1
chr15:62163612|62163826 hsa-miR-150-3p 0 0 1
chr15:62163612|62163826 hsa-miR-206 0 0 1
chr15:62163612|62163826 hsa-miR-487a-5p 0 0 1
chr15:62163612|62163826 hsa-miR-487a-3p 0 0 1
chr15:62163612|62163826 hsa-miR-522-5p 0 0 1
chr15:62163612|62163826 hsa-miR-522-3p 0 0 1
chr15:62163612|62163826 hsa-miR-609 1 0 1
chr15:62163612|62163826 hsa-miR-613 0 0 1
chr15:62163612|62163826 hsa-miR-660-5p 0 0 1
chr15:62163612|62163826 hsa-miR-660-3p 0 0 1
chr15:62163612|62163826 hsa-miR-1299 0 1 1
chr15:62163612|62163826 hsa-miR-532-3p 0 0 1
chr15:62163612|62163826 hsa-miR-615-5p 0 0 1
chr15:62163612|62163826 hsa-miR-502-5p 0 0 1
chr15:62163612|62163826 hsa-miR-875-3p 0 0 1
chr15:62163612|62163826 hsa-miR-1 0 0 1
chr15:62163612|62163826 hsa-miR-554 0 1 0
chr15:62163612|62163826 hsa-miR-608 1 0 0
chr15:62163612|62163826 hsa-miR-3170 1 0 0
chr15:62163612|62163826 hsa-miR-1193 1 0 0
chr15:62163612|62163826 hsa-miR-4270 0 1 0
chr15:62163612|62163826 hsa-miR-3911 1 1 0
chr15:62163612|62163826 hsa-miR-4470 1 0 0
chr15:62163612|62163826 hsa-miR-4490 0 1 0
chr15:62163612|62163826 hsa-miR-4491 1 1 0
chr15:62163612|62163826 hsa-miR-4510 1 1 0
chr15:62163612|62163826 hsa-miR-4657 1 1 0
chr15:62163612|62163826 hsa-miR-6134 1 0 0
chr15:62163612|62163826 hsa-miR-6833-5p 1 0 0
chr15:62163612|62163826 hsa-miR-6515-5p 1 0 0
chr15:62163612|62163826 hsa-miR-6744-5p 1 0 0
chr15:62163612|62163826 hsa-miR-6759-5p 1 0 0
chr15:62163612|62163826 hsa-miR-8069 1 0 0
chr15:62163612|62163826 hsa-miR-3682-3p 1 1 0
chr15:62163612|62163826 hsa-miR-7110-3p 0 1 0
chr15:62163612|62163826 hsa-miR-6748-5p 1 0 0
chr15:62163612|62163826 hsa-miR-7855-5p 1 1 0
chr15:62163612|62163826 hsa-miR-4713-5p 0 1 0
chr15:62163612|62163826 hsa-miR-6786-5p 1 0 0
chr15:62163612|62163826 hsa-miR-3691-5p 1 0 0
chr15:62163612|62163826 hsa-miR-6717-5p 1 0 0
chr15:62163612|62163826 hsa-miR-584-3p 0 1 0
chr15:62163612|62163826 hsa-miR-4773 0 1 0
chr15:62163612|62163826 hsa-miR-4746-5p 0 1 0
chr15:62163612|62163826 hsa-miR-6769b-5p 1 0 0
chr15:62163612|62163826 hsa-miR-6778-5p 1 0 0
chr15:62163612|62163826 hsa-miR-6752-5p 1 0 0
chr15:62163612|62163826 hsa-miR-6756-5p 1 0 0
chr15:62163612|62163826 hsa-miR-6803-5p 1 0 0
chr15:62163612|62163826 hsa-miR-4725-3p 1 0 0
chr15:62163612|62163826 hsa-miR-34b-5p 0 1 0
chr15:62163612|62163826 hsa-miR-4665-5p 1 0 0
chr15:62163612|62163826 hsa-miR-4768-5p 0 1 0
chr15:62163612|62163826 hsa-miR-6833-3p 0 1 0
chr15:62163612|62163826 hsa-miR-5588-3p 0 1 0
chr15:62163612|62163826 hsa-miR-4659a-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr15:62163612|62163826
ORF Type ORF1
Protein Length 57
Nucleotide Length 171
Protein Sequence MTFYFLTIHICHRLLVKKKKIMTPCSVHRTPISLSRPFLHSKEKWVGLGLGEKGSTP
Nucleotide Sequence TTGACGTTTTACTTCCTCACCATCCACATTTGTCATCGTCTATTGGTAAAGAAGAAAAAGATAATGACTCCCTGTTCTGTTCACAGGACCCCCATATCTCTTTCCAGACCATTTTTGCATTCCAAGGAAAAATGGGTTGGCTTGGGACTGGGAGAGAAAGGAAGTACACCC
CircID chr15:62163612|62163826
ORF Type ORF2
Protein Length 32
Nucleotide Length 96
Protein Sequence MFTGPPYLFPDHFCIPRKNGLAWDWERKEVHP
Nucleotide Sequence CTGTTCACAGGACCCCCATATCTCTTTCCAGACCATTTTTGCATTCCAAGGAAAAATGGGTTGGCTTGGGACTGGGAGAGAAAGGAAGTACACCCA
CircID chr15:62163612|62163826
ORF Type ORF3
Protein Length 48
Nucleotide Length 144
Protein Sequence MSSSIGKEEKDNDSLFCSQDPHISFQTIFAFQGKMGWLGTGRERKYTH
Nucleotide Sequence TTGTCATCGTCTATTGGTAAAGAAGAAAAAGATAATGACTCCCTGTTCTGTTCACAGGACCCCCATATCTCTTTCCAGACCATTTTTGCATTCCAAGGAAAAATGGGTTGGCTTGGGACTGGGAGAGAAAGGAAGTACACCCAT
CircID chr15:62163612|62163826
ORF Type ORF4
Protein Length 30
Nucleotide Length 93
Protein Sequence MGVLPFSPSPKPTHFSLECKNGLERDMGVL
Nucleotide Sequence ATGGGTGTACTTCCTTTCTCTCCCAGTCCCAAGCCAACCCATTTTTCCTTGGAATGCAAAAATGGTCTGGAAAGAGATATGGGGGTCCTGTGA
CircID chr15:62163612|62163826
ORF Type ORF5
Protein Length 31
Nucleotide Length 96
Protein Sequence MVWKEIWGSCEQNRESLSFSSLPIDDDKCGW
Nucleotide Sequence ATGGTCTGGAAAGAGATATGGGGGTCCTGTGAACAGAACAGGGAGTCATTATCTTTTTCTTCTTTACCAATAGACGATGACAAATGTGGATGGTGA
CircID chr15:62163612|62163826
ORF Type ORF6
Protein Length 26
Nucleotide Length 81
Protein Sequence MQKWSGKRYGGPVNRTGSHYLFLLYQ
Nucleotide Sequence ATGCAAAAATGGTCTGGAAAGAGATATGGGGGTCCTGTGAACAGAACAGGGAGTCATTATCTTTTTCTTCTTTACCAATAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab