CircRNA Information

General Information
circRNA Basic Information
CircID chr15:64141473|64141618
Strand +
CircType exon
Host Gene ENSG00000028528.13;
Algorism CIRI2;
Sequence TTGACATTTCCCTAGATGCGCCTACCTCACCCTGCCAGACAGACAGGGAGGCAGAAGCAACAAACACTTTTACACCTTTTAGACTCAGTTCAAGCATCAGGTTCTCCACAAAGTCCTCCCTCCTGGGTCCCCAGCTGGAATACCAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr15:64141473|64141618 hsa-let-7b-5p 0 0 1
chr15:64141473|64141618 hsa-let-7b-3p 0 0 1
chr15:64141473|64141618 hsa-let-7c-5p 0 0 1
chr15:64141473|64141618 hsa-let-7c-3p 0 0 1
chr15:64141473|64141618 hsa-let-7d-5p 0 0 1
chr15:64141473|64141618 hsa-let-7d-3p 0 0 1
chr15:64141473|64141618 hsa-let-7e-5p 0 0 1
chr15:64141473|64141618 hsa-let-7e-3p 0 0 1
chr15:64141473|64141618 hsa-miR-98-5p 0 0 1
chr15:64141473|64141618 hsa-miR-98-3p 0 0 1
chr15:64141473|64141618 hsa-let-7g-5p 0 0 1
chr15:64141473|64141618 hsa-let-7g-3p 0 0 1
chr15:64141473|64141618 hsa-let-7i-5p 0 0 1
chr15:64141473|64141618 hsa-let-7i-3p 0 0 1
chr15:64141473|64141618 hsa-miR-202-5p 0 0 1
chr15:64141473|64141618 hsa-miR-202-3p 0 0 1
chr15:64141473|64141618 hsa-miR-589-5p 0 0 1
chr15:64141473|64141618 hsa-miR-589-3p 0 0 1
chr15:64141473|64141618 hsa-miR-627-5p 0 0 1
chr15:64141473|64141618 hsa-miR-627-3p 0 0 1
chr15:64141473|64141618 hsa-miR-665 0 0 1
chr15:64141473|64141618 hsa-miR-924 0 0 1
chr15:64141473|64141618 hsa-miR-1231 0 0 1
chr15:64141473|64141618 hsa-miR-1294 0 0 1
chr15:64141473|64141618 hsa-miR-548n 0 0 1
chr15:64141473|64141618 hsa-miR-1321 0 0 1
chr15:64141473|64141618 hsa-miR-339-5p 0 0 1
chr15:64141473|64141618 hsa-miR-1207-3p 0 0 1
chr15:64141473|64141618 hsa-miR-1207-5p 0 0 1
chr15:64141473|64141618 hsa-miR-1274a 0 0 1
chr15:64141473|64141618 hsa-miR-1274b 0 0 1
chr15:64141473|64141618 hsa-let-7a 0 0 1
chr15:64141473|64141618 hsa-let-7f 0 0 1
chr15:64141473|64141618 hsa-miR-1202 1 0 0
chr15:64141473|64141618 hsa-miR-1269a 1 0 0
chr15:64141473|64141618 hsa-miR-3131 1 0 0
chr15:64141473|64141618 hsa-miR-3147 1 0 0
chr15:64141473|64141618 hsa-miR-4458 1 0 0
chr15:64141473|64141618 hsa-miR-4739 1 0 0
chr15:64141473|64141618 hsa-miR-5787 1 0 0
chr15:64141473|64141618 hsa-miR-8077 1 0 0
chr15:64141473|64141618 hsa-miR-8081 1 0 0
chr15:64141473|64141618 hsa-miR-8089 1 0 0
chr15:64141473|64141618 hsa-miR-370-3p 1 0 0
chr15:64141473|64141618 hsa-miR-4731-5p 1 0 0
chr15:64141473|64141618 hsa-miR-7106-5p 1 0 0
chr15:64141473|64141618 hsa-miR-6825-5p 1 0 0
chr15:64141473|64141618 hsa-miR-6894-5p 1 0 0
chr15:64141473|64141618 hsa-miR-7847-3p 1 0 0
chr15:64141473|64141618 hsa-miR-7154-3p 1 0 0
chr15:64141473|64141618 hsa-miR-27b-5p 1 0 0
chr15:64141473|64141618 hsa-miR-491-5p 1 0 0
chr15:64141473|64141618 hsa-miR-7109-5p 1 0 0
chr15:64141473|64141618 hsa-miR-1229-5p 1 0 0
chr15:64141473|64141618 hsa-miR-3160-3p 1 0 0
chr15:64141473|64141618 hsa-miR-149-3p 1 0 0
chr15:64141473|64141618 hsa-miR-4761-5p 1 0 0
chr15:64141473|64141618 hsa-miR-18a-5p 1 0 0
chr15:64141473|64141618 hsa-miR-6756-5p 1 0 0
chr15:64141473|64141618 hsa-miR-1249-5p 1 0 0
chr15:64141473|64141618 hsa-miR-6797-5p 1 0 0
chr15:64141473|64141618 hsa-miR-6808-5p 1 0 0
chr15:64141473|64141618 hsa-miR-6794-5p 1 0 0
chr15:64141473|64141618 hsa-miR-6795-5p 1 0 0
chr15:64141473|64141618 hsa-miR-6883-5p 1 0 0
chr15:64141473|64141618 hsa-miR-6887-5p 1 0 0
chr15:64141473|64141618 hsa-miR-365a-5p 1 0 0
chr15:64141473|64141618 hsa-miR-4700-5p 1 0 0
chr15:64141473|64141618 hsa-miR-6785-5p 1 0 0
chr15:64141473|64141618 hsa-miR-18b-5p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr15:64141473|64141618
ORF Type ORF1
Protein Length 43
Nucleotide Length 129
Protein Sequence MRLPHPARQTGRQKQQTLLHLLDSVQASGSPQSPPSWVPSWNT
Nucleotide Sequence ATGCGCCTACCTCACCCTGCCAGACAGACAGGGAGGCAGAAGCAACAAACACTTTTACACCTTTTAGACTCAGTTCAAGCATCAGGTTCTCCACAAAGTCCTCCCTCCTGGGTCCCCAGCTGGAATACC
CircID chr15:64141473|64141618
ORF Type ORF2
Protein Length 33
Nucleotide Length 99
Protein Sequence MMLELSLKGVKVFVASASLSVWQGEVGASREMS
Nucleotide Sequence CTGATGCTTGAACTGAGTCTAAAAGGTGTAAAAGTGTTTGTTGCTTCTGCCTCCCTGTCTGTCTGGCAGGGTGAGGTAGGCGCATCTAGGGAAATGTCA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab