CircRNA Information

General Information
circRNA Basic Information
CircID chr15:68211585|68211822
Strand +
CircType exon
Host Gene ENSG00000128973.10;
Algorism CIRI2;
Sequence GTACGTGAGCATCATCATCTTCATCATGGGTGCCAGCATCCACCTGGTGGGTGACTCTGTCAACCACCGCCTGCTCTTCAGTGGCTACCAGCACCACCTGTCTGTCCGTGAGAACCCCATCATCAAGAATCTCAAGCCGGAGACGCTGGTGAGGCCACCTCCTGCTCCCTGCCTGTAAGCCCTAGGAGCACAGTCTGTCCTGGGAGGCTGAAGAAATGGCCCCCACCCCTCGCCGCAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr15:68211585|68211822 hsa-miR-526b-5p 0 0 1
chr15:68211585|68211822 hsa-miR-526b-3p 0 0 1
chr15:68211585|68211822 hsa-miR-552-5p 0 0 1
chr15:68211585|68211822 hsa-miR-552-3p 0 0 1
chr15:68211585|68211822 hsa-miR-563 0 1 1
chr15:68211585|68211822 hsa-miR-600 0 0 1
chr15:68211585|68211822 hsa-miR-608 1 0 1
chr15:68211585|68211822 hsa-miR-940 0 0 1
chr15:68211585|68211822 hsa-miR-1178-5p 0 0 1
chr15:68211585|68211822 hsa-miR-1178-3p 0 0 1
chr15:68211585|68211822 hsa-miR-1226-5p 0 0 1
chr15:68211585|68211822 hsa-miR-1226-3p 0 0 1
chr15:68211585|68211822 hsa-miR-1229-5p 0 0 1
chr15:68211585|68211822 hsa-miR-1229-3p 0 0 1
chr15:68211585|68211822 hsa-miR-1272 0 1 1
chr15:68211585|68211822 hsa-miR-1322 0 0 1
chr15:68211585|68211822 hsa-miR-1324 0 0 1
chr15:68211585|68211822 hsa-miR-876-3p 0 1 1
chr15:68211585|68211822 hsa-miR-1207-5p 1 1 1
chr15:68211585|68211822 hsa-miR-138 0 0 1
chr15:68211585|68211822 hsa-miR-602 1 0 0
chr15:68211585|68211822 hsa-miR-637 1 0 0
chr15:68211585|68211822 hsa-miR-2278 0 1 0
chr15:68211585|68211822 hsa-miR-3165 0 1 0
chr15:68211585|68211822 hsa-miR-3170 1 1 0
chr15:68211585|68211822 hsa-miR-4252 0 1 0
chr15:68211585|68211822 hsa-miR-4270 0 1 0
chr15:68211585|68211822 hsa-miR-4436a 0 1 0
chr15:68211585|68211822 hsa-miR-4447 0 1 0
chr15:68211585|68211822 hsa-miR-4494 0 1 0
chr15:68211585|68211822 hsa-miR-4502 0 1 0
chr15:68211585|68211822 hsa-miR-4514 0 1 0
chr15:68211585|68211822 hsa-miR-3960 1 0 0
chr15:68211585|68211822 hsa-miR-4673 1 0 0
chr15:68211585|68211822 hsa-miR-4706 1 1 0
chr15:68211585|68211822 hsa-miR-6081 1 0 0
chr15:68211585|68211822 hsa-miR-6165 0 1 0
chr15:68211585|68211822 hsa-miR-8072 1 0 0
chr15:68211585|68211822 hsa-miR-211-3p 1 0 0
chr15:68211585|68211822 hsa-miR-92a-2-5p 0 1 0
chr15:68211585|68211822 hsa-miR-6840-3p 1 1 0
chr15:68211585|68211822 hsa-miR-27a-5p 0 1 0
chr15:68211585|68211822 hsa-miR-4709-3p 1 1 0
chr15:68211585|68211822 hsa-miR-4722-5p 0 1 0
chr15:68211585|68211822 hsa-miR-6890-5p 1 0 0
chr15:68211585|68211822 hsa-miR-3682-3p 1 0 0
chr15:68211585|68211822 hsa-miR-23a-5p 1 0 0
chr15:68211585|68211822 hsa-miR-6782-5p 1 1 0
chr15:68211585|68211822 hsa-miR-6786-5p 1 0 0
chr15:68211585|68211822 hsa-miR-5088-5p 1 0 0
chr15:68211585|68211822 hsa-miR-193b-5p 1 0 0
chr15:68211585|68211822 hsa-miR-3691-5p 1 1 0
chr15:68211585|68211822 hsa-miR-4690-5p 0 1 0
chr15:68211585|68211822 hsa-miR-6878-3p 0 1 0
chr15:68211585|68211822 hsa-miR-4787-5p 1 0 0
chr15:68211585|68211822 hsa-miR-4446-3p 1 0 0
chr15:68211585|68211822 hsa-miR-3162-5p 0 1 0
chr15:68211585|68211822 hsa-miR-7112-5p 1 0 0
chr15:68211585|68211822 hsa-miR-4797-5p 0 1 0
chr15:68211585|68211822 hsa-miR-4524b-3p 0 1 0
chr15:68211585|68211822 hsa-miR-4763-3p 1 1 0
chr15:68211585|68211822 hsa-miR-6787-5p 1 1 0
chr15:68211585|68211822 hsa-miR-6812-5p 1 0 0
chr15:68211585|68211822 hsa-miR-6893-5p 0 1 0
chr15:68211585|68211822 hsa-miR-6737-5p 1 0 0
chr15:68211585|68211822 hsa-miR-6743-5p 1 0 0
chr15:68211585|68211822 hsa-miR-6756-5p 1 0 0
chr15:68211585|68211822 hsa-miR-6803-5p 1 0 0
chr15:68211585|68211822 hsa-miR-6815-5p 0 1 0
chr15:68211585|68211822 hsa-miR-6819-5p 1 0 0
chr15:68211585|68211822 hsa-miR-6851-5p 0 1 0
chr15:68211585|68211822 hsa-miR-6808-5p 1 1 0
chr15:68211585|68211822 hsa-miR-6879-5p 1 0 0
chr15:68211585|68211822 hsa-miR-328-5p 0 1 0
chr15:68211585|68211822 hsa-miR-4632-5p 1 0 0
chr15:68211585|68211822 hsa-miR-4649-5p 1 1 0
chr15:68211585|68211822 hsa-miR-4685-5p 1 0 0
chr15:68211585|68211822 hsa-miR-4701-3p 1 0 0
chr15:68211585|68211822 hsa-miR-4745-5p 1 0 0
chr15:68211585|68211822 hsa-miR-6777-5p 0 1 0
chr15:68211585|68211822 hsa-miR-6511b-5p 1 0 0
chr15:68211585|68211822 hsa-miR-5008-3p 1 1 0
chr15:68211585|68211822 hsa-miR-6855-5p 1 1 0
chr15:68211585|68211822 hsa-miR-7151-3p 0 1 0
chr15:68211585|68211822 hsa-miR-4472 0 1 0
chr15:68211585|68211822 hsa-miR-6766-5p 0 1 0
chr15:68211585|68211822 hsa-miR-3689d 0 1 0
chr15:68211585|68211822 hsa-miR-6791-5p 1 0 0
chr15:68211585|68211822 hsa-miR-6762-5p 0 1 0
chr15:68211585|68211822 hsa-miR-9851-5p 0 1 0
chr15:68211585|68211822 hsa-miR-6511a-3p 0 1 0
chr15:68211585|68211822 hsa-miR-6511b-3p 0 1 0
chr15:68211585|68211822 hsa-miR-5581-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr15:68211585|68211822
ORF Type ORF1
Protein Length 50
Nucleotide Length 153
Protein Sequence MGASIHLVGDSVNHRLLFSGYQHHLSVRENPIIKNLKPETLVRPPPAPCL
Nucleotide Sequence ATGGGTGCCAGCATCCACCTGGTGGGTGACTCTGTCAACCACCGCCTGCTCTTCAGTGGCTACCAGCACCACCTGTCTGTCCGTGAGAACCCCATCATCAAGAATCTCAAGCCGGAGACGCTGGTGAGGCCACCTCCTGCTCCCTGCCTGTAA
CircID chr15:68211585|68211822
ORF Type ORF2
Protein Length 31
Nucleotide Length 96
Protein Sequence MSTTACSSVATSTTCLSVRTPSSRISSRRRW
Nucleotide Sequence CTGTCAACCACCGCCTGCTCTTCAGTGGCTACCAGCACCACCTGTCTGTCCGTGAGAACCCCATCATCAAGAATCTCAAGCCGGAGACGCTGGTGA
CircID chr15:68211585|68211822
ORF Type ORF3
Protein Length 30
Nucleotide Length 90
Protein Sequence MVATEEQAVVDRVTHQVDAGTHDEDDDAHV
Nucleotide Sequence CTGGTAGCCACTGAAGAGCAGGCGGTGGTTGACAGAGTCACCCACCAGGTGGATGCTGGCACCCATGATGAAGATGATGATGCTCACGTA
CircID chr15:68211585|68211822
ORF Type ORF4
Protein Length 27
Nucleotide Length 81
Protein Sequence MKSRRWLTESPTRWMLAPMMKMMMLTY
Nucleotide Sequence CTGAAGAGCAGGCGGTGGTTGACAGAGTCACCCACCAGGTGGATGCTGGCACCCATGATGAAGATGATGATGCTCACGTAC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab