CircRNA Information

General Information
circRNA Basic Information
CircID chr15:72375773|72375981
Strand +
CircType exon
Host Gene ENSG00000260729.1;
Algorism CIRI2;
Sequence CAGCGGGCCATGACAAGCTCCAGGCTTTGGTTTTCGCTGCTGCTGGCGGCAGCGTTCGCAGGACGGGCGACGGCCCTCTGGCCCTGGCCTCAGAACTTCCAAACCTCCGACCAGCGCTACGTCCTTTACCCGAACAACTTTCAATTCCAGTACGATGTCAGCTCGGCCGCGCAGCCCGGCTGCTCAGTCCTCGACGAGGCCTTCCAGCG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr15:72375773|72375981 hsa-miR-15a-5p 0 0 1
chr15:72375773|72375981 hsa-miR-15a-3p 0 0 1
chr15:72375773|72375981 hsa-miR-15b-5p 0 0 1
chr15:72375773|72375981 hsa-miR-15b-3p 0 0 1
chr15:72375773|72375981 hsa-miR-195-5p 0 0 1
chr15:72375773|72375981 hsa-miR-195-3p 0 0 1
chr15:72375773|72375981 hsa-miR-375-5p 0 0 1
chr15:72375773|72375981 hsa-miR-375-3p 0 0 1
chr15:72375773|72375981 hsa-miR-382-5p 0 0 1
chr15:72375773|72375981 hsa-miR-382-3p 0 0 1
chr15:72375773|72375981 hsa-miR-424-5p 0 0 1
chr15:72375773|72375981 hsa-miR-424-3p 0 0 1
chr15:72375773|72375981 hsa-miR-488-5p 0 0 1
chr15:72375773|72375981 hsa-miR-488-3p 0 0 1
chr15:72375773|72375981 hsa-miR-489-5p 0 0 1
chr15:72375773|72375981 hsa-miR-489-3p 0 0 1
chr15:72375773|72375981 hsa-miR-497-5p 0 0 1
chr15:72375773|72375981 hsa-miR-497-3p 0 0 1
chr15:72375773|72375981 hsa-miR-503-5p 0 0 1
chr15:72375773|72375981 hsa-miR-503-3p 0 0 1
chr15:72375773|72375981 hsa-miR-487b-5p 0 0 1
chr15:72375773|72375981 hsa-miR-487b-3p 0 0 1
chr15:72375773|72375981 hsa-miR-604 0 0 1
chr15:72375773|72375981 hsa-miR-611 0 0 1
chr15:72375773|72375981 hsa-miR-1181 0 1 1
chr15:72375773|72375981 hsa-miR-1243 0 0 1
chr15:72375773|72375981 hsa-miR-1247-5p 0 0 1
chr15:72375773|72375981 hsa-miR-1247-3p 0 0 1
chr15:72375773|72375981 hsa-miR-151-5p 0 0 1
chr15:72375773|72375981 hsa-miR-16 0 0 1
chr15:72375773|72375981 hsa-miR-1254 0 0 1
chr15:72375773|72375981 hsa-miR-661 1 0 0
chr15:72375773|72375981 hsa-miR-762 1 0 0
chr15:72375773|72375981 hsa-miR-1202 0 1 0
chr15:72375773|72375981 hsa-miR-1299 1 0 0
chr15:72375773|72375981 hsa-miR-3131 1 1 0
chr15:72375773|72375981 hsa-miR-4254 0 1 0
chr15:72375773|72375981 hsa-miR-3621 1 0 0
chr15:72375773|72375981 hsa-miR-4479 1 1 0
chr15:72375773|72375981 hsa-miR-4493 0 1 0
chr15:72375773|72375981 hsa-miR-4530 0 1 0
chr15:72375773|72375981 hsa-miR-4706 1 0 0
chr15:72375773|72375981 hsa-miR-4741 1 0 0
chr15:72375773|72375981 hsa-miR-4748 0 1 0
chr15:72375773|72375981 hsa-miR-5093 1 0 0
chr15:72375773|72375981 hsa-miR-6069 1 0 0
chr15:72375773|72375981 hsa-miR-6086 1 0 0
chr15:72375773|72375981 hsa-miR-6125 1 0 0
chr15:72375773|72375981 hsa-miR-6128 0 1 0
chr15:72375773|72375981 hsa-miR-6131 1 1 0
chr15:72375773|72375981 hsa-miR-8089 1 0 0
chr15:72375773|72375981 hsa-miR-12119 0 1 0
chr15:72375773|72375981 hsa-miR-12127 1 0 0
chr15:72375773|72375981 hsa-miR-138-5p 1 0 0
chr15:72375773|72375981 hsa-miR-6765-5p 1 1 0
chr15:72375773|72375981 hsa-miR-3692-5p 1 0 0
chr15:72375773|72375981 hsa-miR-6089 1 1 0
chr15:72375773|72375981 hsa-miR-6880-5p 1 0 0
chr15:72375773|72375981 hsa-miR-6746-5p 1 0 0
chr15:72375773|72375981 hsa-miR-4653-3p 1 0 0
chr15:72375773|72375981 hsa-miR-4722-5p 1 0 0
chr15:72375773|72375981 hsa-miR-6820-5p 1 0 0
chr15:72375773|72375981 hsa-miR-512-3p 1 0 0
chr15:72375773|72375981 hsa-miR-197-5p 1 0 0
chr15:72375773|72375981 hsa-miR-8069 1 0 0
chr15:72375773|72375981 hsa-miR-148a-5p 0 1 0
chr15:72375773|72375981 hsa-miR-6871-5p 1 0 0
chr15:72375773|72375981 hsa-miR-4640-5p 0 1 0
chr15:72375773|72375981 hsa-miR-296-3p 1 0 0
chr15:72375773|72375981 hsa-miR-877-5p 1 0 0
chr15:72375773|72375981 hsa-miR-4787-5p 1 0 0
chr15:72375773|72375981 hsa-miR-4740-5p 0 1 0
chr15:72375773|72375981 hsa-miR-6869-5p 1 1 0
chr15:72375773|72375981 hsa-miR-16-5p 0 1 0
chr15:72375773|72375981 hsa-miR-1233-5p 1 0 0
chr15:72375773|72375981 hsa-miR-5001-5p 1 0 0
chr15:72375773|72375981 hsa-miR-6752-5p 1 0 0
chr15:72375773|72375981 hsa-miR-6815-5p 1 0 0
chr15:72375773|72375981 hsa-miR-6851-5p 1 0 0
chr15:72375773|72375981 hsa-miR-3620-5p 1 1 0
chr15:72375773|72375981 hsa-miR-4632-5p 1 0 0
chr15:72375773|72375981 hsa-miR-4685-5p 0 1 0
chr15:72375773|72375981 hsa-miR-4726-5p 0 1 0
chr15:72375773|72375981 hsa-miR-4749-5p 1 0 0
chr15:72375773|72375981 hsa-miR-3187-5p 1 0 0
chr15:72375773|72375981 hsa-miR-1199-5p 1 0 0
chr15:72375773|72375981 hsa-miR-4665-5p 1 0 0
chr15:72375773|72375981 hsa-miR-6837-5p 0 1 0
chr15:72375773|72375981 hsa-miR-6838-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr15:72375773|72375981
ORF Type ORF1
Protein Length 66
Nucleotide Length 198
Protein Sequence MTSSRLWFSLLLAAAFAGRATALWPWPQNFQTSDQRYVLYPNNFQFQYDVSSAAQPGCSVLDEAFQ
Nucleotide Sequence ATGACAAGCTCCAGGCTTTGGTTTTCGCTGCTGCTGGCGGCAGCGTTCGCAGGACGGGCGACGGCCCTCTGGCCCTGGCCTCAGAACTTCCAAACCTCCGACCAGCGCTACGTCCTTTACCCGAACAACTTTCAATTCCAGTACGATGTCAGCTCGGCCGCGCAGCCCGGCTGCTCAGTCCTCGACGAGGCCTTCCAG
CircID chr15:72375773|72375981
ORF Type ORF2
Protein Length 61
Nucleotide Length 183
Protein Sequence MVFAAAGGSVRRTGDGPLALASELPNLRPALRPLPEQLSIPVRCQLGRAARLLSPRRGLPA
Nucleotide Sequence TTGGTTTTCGCTGCTGCTGGCGGCAGCGTTCGCAGGACGGGCGACGGCCCTCTGGCCCTGGCCTCAGAACTTCCAAACCTCCGACCAGCGCTACGTCCTTTACCCGAACAACTTTCAATTCCAGTACGATGTCAGCTCGGCCGCGCAGCCCGGCTGCTCAGTCCTCGACGAGGCCTTCCAGCG
CircID chr15:72375773|72375981
ORF Type ORF3
Protein Length 58
Nucleotide Length 174
Protein Sequence MRGRADIVLELKVVRVKDVALVGGLEVLRPGPEGRRPSCERCRQQQRKPKPGACHGPL
Nucleotide Sequence CTGCGCGGCCGAGCTGACATCGTACTGGAATTGAAAGTTGTTCGGGTAAAGGACGTAGCGCTGGTCGGAGGTTTGGAAGTTCTGAGGCCAGGGCCAGAGGGCCGTCGCCCGTCCTGCGAACGCTGCCGCCAGCAGCAGCGAAAACCAAAGCCTGGAGCTTGTCATGGCCCGCTG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab