CircRNA Information

General Information
circRNA Basic Information
CircID chr15:77484306|77484448
Strand +
CircType exon
Host Gene ENSG00000140382.13;
Algorism CIRI2;
Sequence CTGCCTGCAGTGGTGTGGGGCCCAGACAACGGGCTCTGCTTGCTCTGCCTTTGGTTCCAAAGATCTCAGCTGTAACCTTTAGCCTTGTGCTCTGCAGTGTCAAAACAAAAACAAAAACAAAAACAATGAACAACCAAAAAACC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr15:77484306|77484448 hsa-miR-612 0 0 1
chr15:77484306|77484448 hsa-miR-632 0 0 1
chr15:77484306|77484448 hsa-miR-659-5p 0 0 1
chr15:77484306|77484448 hsa-miR-659-3p 0 0 1
chr15:77484306|77484448 hsa-miR-1231 0 0 1
chr15:77484306|77484448 hsa-miR-1205 0 0 1
chr15:77484306|77484448 hsa-miR-1206 0 0 1
chr15:77484306|77484448 hsa-miR-548m 0 0 1
chr15:77484306|77484448 hsa-miR-129-5p 0 0 1
chr15:77484306|77484448 hsa-miR-296-5p 0 0 1
chr15:77484306|77484448 hsa-miR-509-3-5p 0 0 1
chr15:77484306|77484448 hsa-miR-509-5p 0 0 1
chr15:77484306|77484448 hsa-miR-9 0 0 1
chr15:77484306|77484448 hsa-miR-1285 0 0 1
chr15:77484306|77484448 hsa-miR-514 0 0 1
chr15:77484306|77484448 hsa-miR-453 0 0 1
chr15:77484306|77484448 hsa-miR-940 1 0 0
chr15:77484306|77484448 hsa-miR-4656 1 0 0
chr15:77484306|77484448 hsa-miR-6125 1 0 0
chr15:77484306|77484448 hsa-miR-125a-3p 1 0 0
chr15:77484306|77484448 hsa-miR-874-5p 1 0 0
chr15:77484306|77484448 hsa-miR-2467-3p 1 0 0
chr15:77484306|77484448 hsa-miR-3922-5p 1 0 0
chr15:77484306|77484448 hsa-miR-4763-3p 1 0 0
chr15:77484306|77484448 hsa-miR-5189-5p 1 0 0
chr15:77484306|77484448 hsa-miR-6836-5p 1 0 0
chr15:77484306|77484448 hsa-miR-4685-5p 1 0 0
chr15:77484306|77484448 hsa-miR-4667-5p 1 0 0
chr15:77484306|77484448 hsa-miR-362-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr15:77484306|77484448
ORF Type ORF1
Protein Length 25
Nucleotide Length 78
Protein Sequence MQWCGAQTTGSACSAFGSKDLSCNL
Nucleotide Sequence CTGCAGTGGTGTGGGGCCCAGACAACGGGCTCTGCTTGCTCTGCCTTTGGTTCCAAAGATCTCAGCTGTAACCTTTAG
CircID chr15:77484306|77484448
ORF Type ORF2
Protein Length 36
Nucleotide Length 108
Protein Sequence MLALPLVPKISAVTFSLVLCSVKTKTKTKTMNNQKT
Nucleotide Sequence CTGCTTGCTCTGCCTTTGGTTCCAAAGATCTCAGCTGTAACCTTTAGCCTTGTGCTCTGCAGTGTCAAAACAAAAACAAAAACAAAAACAATGAACAACCAAAAAACC
CircID chr15:77484306|77484448
ORF Type ORF3
Protein Length 44
Nucleotide Length 132
Protein Sequence MFIVFVFVFVLTLQSTRLKVTAEIFGTKGRASRARCLGPTPLQA
Nucleotide Sequence TTGTTCATTGTTTTTGTTTTTGTTTTTGTTTTGACACTGCAGAGCACAAGGCTAAAGGTTACAGCTGAGATCTTTGGAACCAAAGGCAGAGCAAGCAGAGCCCGTTGTCTGGGCCCCACACCACTGCAGGCA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab