CircRNA Information

General Information
circRNA Basic Information
CircID chr15:78280350|78280461
Strand +
CircType exon
Host Gene ENSG00000140403.11;
Algorism CIRI2;
Sequence GTCATGCCGTCTGGCACTGCACTCCAGCCTGGGGCCCGTCTTCGTCCTCCTCGTAGGCCTCCCTGTGCTGACGCCAGTTCTGCTCATTGGGACAAAACTCCTTCAGCTCCAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr15:78280350|78280461 hsa-miR-122-5p 0 0 1
chr15:78280350|78280461 hsa-miR-122-3p 0 0 1
chr15:78280350|78280461 hsa-miR-1252-5p 0 0 1
chr15:78280350|78280461 hsa-miR-1252-3p 0 0 1
chr15:78280350|78280461 hsa-miR-1321 0 0 1
chr15:78280350|78280461 hsa-miR-296-5p 0 0 1
chr15:78280350|78280461 hsa-miR-483-5p 0 0 1
chr15:78280350|78280461 hsa-miR-151-5p 0 0 1
chr15:78280350|78280461 hsa-miR-220c 0 0 1
chr15:78280350|78280461 hsa-miR-658 1 0 0
chr15:78280350|78280461 hsa-miR-298 1 0 0
chr15:78280350|78280461 hsa-miR-665 1 0 0
chr15:78280350|78280461 hsa-miR-920 1 0 0
chr15:78280350|78280461 hsa-miR-3131 1 0 0
chr15:78280350|78280461 hsa-miR-3135a 1 0 0
chr15:78280350|78280461 hsa-miR-3154 1 0 0
chr15:78280350|78280461 hsa-miR-3181 1 0 0
chr15:78280350|78280461 hsa-miR-3188 1 0 0
chr15:78280350|78280461 hsa-miR-4270 1 1 0
chr15:78280350|78280461 hsa-miR-4428 1 0 0
chr15:78280350|78280461 hsa-miR-4430 0 1 0
chr15:78280350|78280461 hsa-miR-3135b 1 1 0
chr15:78280350|78280461 hsa-miR-4656 1 0 0
chr15:78280350|78280461 hsa-miR-4689 1 0 0
chr15:78280350|78280461 hsa-miR-4739 1 1 0
chr15:78280350|78280461 hsa-miR-5787 1 0 0
chr15:78280350|78280461 hsa-miR-6081 1 0 0
chr15:78280350|78280461 hsa-miR-6085 1 0 0
chr15:78280350|78280461 hsa-miR-6127 1 0 0
chr15:78280350|78280461 hsa-miR-6860 1 0 0
chr15:78280350|78280461 hsa-miR-12128 0 1 0
chr15:78280350|78280461 hsa-miR-143-5p 0 1 0
chr15:78280350|78280461 hsa-miR-504-3p 1 1 0
chr15:78280350|78280461 hsa-miR-6765-5p 1 0 0
chr15:78280350|78280461 hsa-miR-6894-5p 1 1 0
chr15:78280350|78280461 hsa-miR-6799-5p 1 0 0
chr15:78280350|78280461 hsa-miR-139-3p 1 1 0
chr15:78280350|78280461 hsa-miR-6089 1 0 0
chr15:78280350|78280461 hsa-miR-7847-3p 1 0 0
chr15:78280350|78280461 hsa-miR-7154-3p 0 1 0
chr15:78280350|78280461 hsa-miR-874-5p 0 1 0
chr15:78280350|78280461 hsa-miR-6798-5p 1 0 0
chr15:78280350|78280461 hsa-miR-6760-5p 1 0 0
chr15:78280350|78280461 hsa-miR-6771-5p 1 0 0
chr15:78280350|78280461 hsa-miR-6749-5p 1 1 0
chr15:78280350|78280461 hsa-miR-149-3p 1 0 0
chr15:78280350|78280461 hsa-miR-10400-5p 1 0 0
chr15:78280350|78280461 hsa-miR-1207-5p 1 0 0
chr15:78280350|78280461 hsa-miR-4763-3p 1 0 0
chr15:78280350|78280461 hsa-miR-5001-5p 0 1 0
chr15:78280350|78280461 hsa-miR-6754-5p 1 1 0
chr15:78280350|78280461 hsa-miR-6803-5p 1 0 0
chr15:78280350|78280461 hsa-miR-6813-5p 1 0 0
chr15:78280350|78280461 hsa-miR-1249-5p 1 0 0
chr15:78280350|78280461 hsa-miR-6751-5p 1 0 0
chr15:78280350|78280461 hsa-miR-7111-5p 1 0 0
chr15:78280350|78280461 hsa-miR-328-5p 1 0 0
chr15:78280350|78280461 hsa-miR-4745-5p 1 0 0
chr15:78280350|78280461 hsa-miR-6735-5p 1 0 0
chr15:78280350|78280461 hsa-miR-6795-5p 1 0 0
chr15:78280350|78280461 hsa-miR-6846-5p 1 0 0
chr15:78280350|78280461 hsa-miR-6848-5p 1 0 0
chr15:78280350|78280461 hsa-miR-6858-5p 1 0 0
chr15:78280350|78280461 hsa-miR-6887-5p 1 0 0
chr15:78280350|78280461 hsa-miR-6889-5p 1 0 0
chr15:78280350|78280461 hsa-miR-1914-3p 1 0 0
chr15:78280350|78280461 hsa-miR-3173-3p 1 0 0
chr15:78280350|78280461 hsa-miR-6724-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr15:78280350|78280461
ORF Type ORF1
Protein Length 36
Nucleotide Length 108
Protein Sequence MPSGTALQPGARLRPPRRPPCADASSAHWDKTPSAP
Nucleotide Sequence ATGCCGTCTGGCACTGCACTCCAGCCTGGGGCCCGTCTTCGTCCTCCTCGTAGGCCTCCCTGTGCTGACGCCAGTTCTGCTCATTGGGACAAAACTCCTTCAGCTCCA
CircID chr15:78280350|78280461
ORF Type ORF2
Protein Length 34
Nucleotide Length 102
Protein Sequence MALHSSLGPVFVLLVGLPVLTPVLLIGTKLLQLH
Nucleotide Sequence CTGGCACTGCACTCCAGCCTGGGGCCCGTCTTCGTCCTCCTCGTAGGCCTCCCTGTGCTGACGCCAGTTCTGCTCATTGGGACAAAACTCCTTCAGCTCCAC
CircID chr15:78280350|78280461
ORF Type ORF3
Protein Length 34
Nucleotide Length 105
Protein Sequence MKEFCPNEQNWRQHREAYEEDEDGPQAGVQCQTA
Nucleotide Sequence CTGAAGGAGTTTTGTCCCAATGAGCAGAACTGGCGTCAGCACAGGGAGGCCTACGAGGAGGACGAAGACGGGCCCCAGGCTGGAGTGCAGTGCCAGACGGCATGA
CircID chr15:78280350|78280461
ORF Type ORF4
Protein Length 29
Nucleotide Length 87
Protein Sequence MSRTGVSTGRPTRRTKTGPRLECSARRHD
Nucleotide Sequence ATGAGCAGAACTGGCGTCAGCACAGGGAGGCCTACGAGGAGGACGAAGACGGGCCCCAGGCTGGAGTGCAGTGCCAGACGGCATGAC
CircID chr15:78280350|78280461
ORF Type ORF5
Protein Length 25
Nucleotide Length 75
Protein Sequence MASAQGGLRGGRRRAPGWSAVPDGM
Nucleotide Sequence CTGGCGTCAGCACAGGGAGGCCTACGAGGAGGACGAAGACGGGCCCCAGGCTGGAGTGCAGTGCCAGACGGCATG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab