CircRNA Information

General Information
circRNA Basic Information
CircID chr15:88658799|88658973
Strand -
CircType exon
Host Gene
Algorism CIRI2;
Sequence CTGACTCTTTCTGACTGGGAGTCATCTACCCTTGGCCTGGATGTGTCCAAGGACAGAAAATCAACTTCTCAAAAGCACTTCTCAGAGGGTGGGGGCCCTGGATTTAGGCATAGCAAGGTTTGTCCCCCTCAAGCTCACGCCCACAAGAAATTCAATCCCACTTTAATGAGGTGAC
circRNA Expression in different cancers

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circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr15:88658799|88658973 hsa-miR-17-5p 0 0 1
chr15:88658799|88658973 hsa-miR-17-3p 0 0 1
chr15:88658799|88658973 hsa-miR-20a-5p 0 0 1
chr15:88658799|88658973 hsa-miR-20a-3p 0 0 1
chr15:88658799|88658973 hsa-miR-93-5p 0 0 1
chr15:88658799|88658973 hsa-miR-93-3p 0 0 1
chr15:88658799|88658973 hsa-miR-106a-5p 0 0 1
chr15:88658799|88658973 hsa-miR-106a-3p 0 0 1
chr15:88658799|88658973 hsa-miR-106b-5p 0 0 1
chr15:88658799|88658973 hsa-miR-106b-3p 0 0 1
chr15:88658799|88658973 hsa-miR-302a-5p 0 0 1
chr15:88658799|88658973 hsa-miR-302a-3p 0 0 1
chr15:88658799|88658973 hsa-miR-302b-5p 0 0 1
chr15:88658799|88658973 hsa-miR-302b-3p 0 0 1
chr15:88658799|88658973 hsa-miR-302c-5p 0 0 1
chr15:88658799|88658973 hsa-miR-302c-3p 0 0 1
chr15:88658799|88658973 hsa-miR-302d-5p 0 0 1
chr15:88658799|88658973 hsa-miR-302d-3p 0 0 1
chr15:88658799|88658973 hsa-miR-372-5p 0 0 1
chr15:88658799|88658973 hsa-miR-372-3p 0 0 1
chr15:88658799|88658973 hsa-miR-373-5p 0 0 1
chr15:88658799|88658973 hsa-miR-373-3p 0 0 1
chr15:88658799|88658973 hsa-miR-20b-5p 0 0 1
chr15:88658799|88658973 hsa-miR-20b-3p 0 0 1
chr15:88658799|88658973 hsa-miR-520e-5p 0 0 1
chr15:88658799|88658973 hsa-miR-520e-3p 0 0 1
chr15:88658799|88658973 hsa-miR-520f-5p 0 0 1
chr15:88658799|88658973 hsa-miR-520f-3p 0 0 1
chr15:88658799|88658973 hsa-miR-520b-5p 0 0 1
chr15:88658799|88658973 hsa-miR-520b-3p 0 0 1
chr15:88658799|88658973 hsa-miR-519d-5p 0 0 1
chr15:88658799|88658973 hsa-miR-519d-3p 0 0 1
chr15:88658799|88658973 hsa-miR-578 0 0 1
chr15:88658799|88658973 hsa-miR-580-5p 0 0 1
chr15:88658799|88658973 hsa-miR-580-3p 0 0 1
chr15:88658799|88658973 hsa-miR-581 0 0 1
chr15:88658799|88658973 hsa-miR-585-5p 0 0 1
chr15:88658799|88658973 hsa-miR-585-3p 0 0 1
chr15:88658799|88658973 hsa-miR-605-5p 0 0 1
chr15:88658799|88658973 hsa-miR-605-3p 0 0 1
chr15:88658799|88658973 hsa-miR-1253 0 0 1
chr15:88658799|88658973 hsa-miR-302e 0 0 1
chr15:88658799|88658973 hsa-miR-296-5p 0 1 1
chr15:88658799|88658973 hsa-miR-423-5p 0 0 1
chr15:88658799|88658973 hsa-miR-532-5p 0 0 1
chr15:88658799|88658973 hsa-miR-520d-3p 0 0 1
chr15:88658799|88658973 hsa-miR-520a-3p 0 0 1
chr15:88658799|88658973 hsa-miR-520c-3p 0 0 1
chr15:88658799|88658973 hsa-miR-1300 0 0 1
chr15:88658799|88658973 hsa-miR-1268 0 0 1
chr15:88658799|88658973 hsa-miR-1268a 1 0 0
chr15:88658799|88658973 hsa-miR-4322 1 1 0
chr15:88658799|88658973 hsa-miR-4265 0 1 0
chr15:88658799|88658973 hsa-miR-1268b 1 1 0
chr15:88658799|88658973 hsa-miR-12119 1 0 0
chr15:88658799|88658973 hsa-miR-1972 0 1 0
chr15:88658799|88658973 hsa-miR-197-5p 0 1 0
chr15:88658799|88658973 hsa-miR-1915-5p 1 0 0
chr15:88658799|88658973 hsa-miR-31-3p 0 1 0
chr15:88658799|88658973 hsa-miR-6715b-3p 0 1 0
chr15:88658799|88658973 hsa-miR-7109-5p 1 0 0
chr15:88658799|88658973 hsa-miR-1226-5p 1 0 0
chr15:88658799|88658973 hsa-miR-4743-3p 0 1 0
chr15:88658799|88658973 hsa-miR-149-3p 1 0 0
chr15:88658799|88658973 hsa-miR-7160-3p 0 1 0
chr15:88658799|88658973 hsa-miR-664b-5p 0 1 0
chr15:88658799|88658973 hsa-miR-3140-3p 1 0 0
chr15:88658799|88658973 hsa-miR-6755-5p 0 1 0
chr15:88658799|88658973 hsa-miR-371b-3p 1 0 0
chr15:88658799|88658973 hsa-miR-6752-5p 1 0 0
chr15:88658799|88658973 hsa-miR-6803-5p 1 0 0
chr15:88658799|88658973 hsa-miR-6751-5p 1 0 0
chr15:88658799|88658973 hsa-miR-642b-3p 0 1 0
chr15:88658799|88658973 hsa-miR-328-5p 1 0 0
chr15:88658799|88658973 hsa-miR-4649-5p 1 0 0
chr15:88658799|88658973 hsa-miR-4749-5p 1 0 0
chr15:88658799|88658973 hsa-miR-6795-5p 1 0 0
chr15:88658799|88658973 hsa-miR-6858-5p 1 0 0
chr15:88658799|88658973 hsa-miR-4758-5p 1 0 0
chr15:88658799|88658973 hsa-miR-6855-5p 1 0 0
chr15:88658799|88658973 hsa-miR-4646-5p 1 0 0
chr15:88658799|88658973 hsa-miR-3184-5p 1 0 0
chr15:88658799|88658973 hsa-miR-6805-3p 1 0 0
chr15:88658799|88658973 hsa-miR-4756-5p 1 0 0
chr15:88658799|88658973 hsa-miR-642a-3p 0 1 0
chr15:88658799|88658973 hsa-miR-4653-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr15:88658799|88658973
ORF Type ORF1
Protein Length 57
Nucleotide Length 174
Protein Sequence LTLSDWESSTLGLDVSKDRKSTSQKHFSEGGGPGFRHSKVCPPQAHAHKKFNPTLMR
Nucleotide Sequence CTGACTCTTTCTGACTGGGAGTCATCTACCCTTGGCCTGGATGTGTCCAAGGACAGAAAATCAACTTCTCAAAAGCACTTCTCAGAGGGTGGGGGCCCTGGATTTAGGCATAGCAAGGTTTGTCCCCCTCAAGCTCACGCCCACAAGAAATTCAATCCCACTTTAATGAGGTGA
CircID chr15:88658799|88658973
ORF Type ORF2
Protein Length 51
Nucleotide Length 156
Protein Sequence MTGSHLPLAWMCPRTENQLLKSTSQRVGALDLGIARFVPLKLTPTRNSIPL
Nucleotide Sequence CTGACTGGGAGTCATCTACCCTTGGCCTGGATGTGTCCAAGGACAGAAAATCAACTTCTCAAAAGCACTTCTCAGAGGGTGGGGGCCCTGGATTTAGGCATAGCAAGGTTTGTCCCCCTCAAGCTCACGCCCACAAGAAATTCAATCCCACTTTAA
CircID chr15:88658799|88658973
ORF Type ORF3
Protein Length 30
Nucleotide Length 93
Protein Sequence MGVIYPWPGCVQGQKINFSKALLRGWGPWI
Nucleotide Sequence CTGGGAGTCATCTACCCTTGGCCTGGATGTGTCCAAGGACAGAAAATCAACTTCTCAAAAGCACTTCTCAGAGGGTGGGGGCCCTGGATTTAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab