CircRNA Information

General Information
circRNA Basic Information
CircID chr15:88899407|88901659
Strand +
CircType exon
Host Gene ENSG00000140545.13;
Algorism CIRI2;
Sequence CTGGGGCTTGCATCTCTTCAGCTGGAACCCCTCCTATGCACGGCTGGACAAGCAGGGCAACTTCAACGCCTGGGTTGCGGGGAGCTACGGTAACGATCAGTGGCTGCAGGTGGACCTGGGCTCCTCGAAGGAGGTGACAGGCATCATCACCCAGGGGGCCCGTAACTTTGGCTCTGTCCAGTTTGTGGCATCCTACAAGGTTGCCTACAGTAATGACAGTGCGAACTGGACTGAGTACCAGGACCCCAGGACTGGCAGCAGTAAGATCTTCCCTGGCAACTGGGACAACCACTCCCACAAGAAGAACTTGTTTGAGACGCCCATCCTGGCTCGCTATGTGCGCATCCTGCCTGTAGCCTGGCACAACCGCATCGCCCTGCGCCTGGAGCTG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr15:88899407|88901659 hsa-miR-198 0 0 1
chr15:88899407|88901659 hsa-miR-517-5p 0 0 1
chr15:88899407|88901659 hsa-miR-517b-3p 0 0 1
chr15:88899407|88901659 hsa-miR-510-5p 0 0 1
chr15:88899407|88901659 hsa-miR-510-3p 0 0 1
chr15:88899407|88901659 hsa-miR-573 0 0 1
chr15:88899407|88901659 hsa-miR-578 0 0 1
chr15:88899407|88901659 hsa-miR-581 0 0 1
chr15:88899407|88901659 hsa-miR-585-5p 0 0 1
chr15:88899407|88901659 hsa-miR-585-3p 0 0 1
chr15:88899407|88901659 hsa-miR-611 0 0 1
chr15:88899407|88901659 hsa-miR-616-5p 0 0 1
chr15:88899407|88901659 hsa-miR-616-3p 0 0 1
chr15:88899407|88901659 hsa-miR-874-5p 0 0 1
chr15:88899407|88901659 hsa-miR-874-3p 0 0 1
chr15:88899407|88901659 hsa-miR-940 0 0 1
chr15:88899407|88901659 hsa-miR-1183 0 1 1
chr15:88899407|88901659 hsa-miR-1227-5p 0 0 1
chr15:88899407|88901659 hsa-miR-1227-3p 0 0 1
chr15:88899407|88901659 hsa-miR-1202 1 0 1
chr15:88899407|88901659 hsa-miR-1262 0 0 1
chr15:88899407|88901659 hsa-miR-1265 0 0 1
chr15:88899407|88901659 hsa-miR-1322 0 0 1
chr15:88899407|88901659 hsa-miR-140-5p 0 1 1
chr15:88899407|88901659 hsa-miR-512-5p 0 0 1
chr15:88899407|88901659 hsa-miR-145-5p 0 0 1
chr15:88899407|88901659 hsa-miR-296-5p 0 0 1
chr15:88899407|88901659 hsa-miR-615-5p 1 1 1
chr15:88899407|88901659 hsa-miR-146b-3p 0 0 1
chr15:88899407|88901659 hsa-miR-1184 1 1 1
chr15:88899407|88901659 hsa-miR-331-3p 0 0 1
chr15:88899407|88901659 hsa-miR-455-3p 0 0 1
chr15:88899407|88901659 hsa-miR-151-5p 0 0 1
chr15:88899407|88901659 hsa-miR-371-5p 0 0 1
chr15:88899407|88901659 hsa-miR-153 0 0 1
chr15:88899407|88901659 hsa-miR-1268 0 0 1
chr15:88899407|88901659 hsa-miR-453 0 0 1
chr15:88899407|88901659 hsa-miR-554 1 0 0
chr15:88899407|88901659 hsa-miR-661 1 0 0
chr15:88899407|88901659 hsa-miR-663a 1 0 0
chr15:88899407|88901659 hsa-miR-151b 0 1 0
chr15:88899407|88901659 hsa-miR-1973 0 1 0
chr15:88899407|88901659 hsa-miR-3197 1 0 0
chr15:88899407|88901659 hsa-miR-4313 0 1 0
chr15:88899407|88901659 hsa-miR-3654 0 1 0
chr15:88899407|88901659 hsa-miR-3665 1 0 0
chr15:88899407|88901659 hsa-miR-3937 1 0 0
chr15:88899407|88901659 hsa-miR-3945 1 0 0
chr15:88899407|88901659 hsa-miR-1268b 1 0 0
chr15:88899407|88901659 hsa-miR-4420 0 1 0
chr15:88899407|88901659 hsa-miR-4466 1 0 0
chr15:88899407|88901659 hsa-miR-2392 0 1 0
chr15:88899407|88901659 hsa-miR-4514 0 1 0
chr15:88899407|88901659 hsa-miR-4673 1 0 0
chr15:88899407|88901659 hsa-miR-4692 0 1 0
chr15:88899407|88901659 hsa-miR-5194 1 1 0
chr15:88899407|88901659 hsa-miR-6069 1 0 0
chr15:88899407|88901659 hsa-miR-6132 0 1 0
chr15:88899407|88901659 hsa-miR-6860 0 1 0
chr15:88899407|88901659 hsa-miR-134-3p 0 1 0
chr15:88899407|88901659 hsa-miR-7155-5p 0 1 0
chr15:88899407|88901659 hsa-miR-4726-3p 1 1 0
chr15:88899407|88901659 hsa-miR-6765-5p 1 0 0
chr15:88899407|88901659 hsa-miR-215-3p 0 1 0
chr15:88899407|88901659 hsa-miR-7106-5p 1 0 0
chr15:88899407|88901659 hsa-miR-6720-5p 1 1 0
chr15:88899407|88901659 hsa-miR-4709-3p 0 1 0
chr15:88899407|88901659 hsa-miR-4755-3p 0 1 0
chr15:88899407|88901659 hsa-miR-3622b-5p 1 0 0
chr15:88899407|88901659 hsa-miR-181a-2-3p 0 1 0
chr15:88899407|88901659 hsa-miR-200b-5p 0 1 0
chr15:88899407|88901659 hsa-miR-23a-5p 0 1 0
chr15:88899407|88901659 hsa-miR-5006-5p 0 1 0
chr15:88899407|88901659 hsa-miR-6788-3p 1 0 0
chr15:88899407|88901659 hsa-miR-1343-3p 0 1 0
chr15:88899407|88901659 hsa-miR-6852-5p 0 1 0
chr15:88899407|88901659 hsa-miR-3944-3p 1 0 0
chr15:88899407|88901659 hsa-miR-4783-3p 1 0 0
chr15:88899407|88901659 hsa-miR-4640-5p 1 0 0
chr15:88899407|88901659 hsa-miR-4691-3p 0 1 0
chr15:88899407|88901659 hsa-miR-6514-3p 0 1 0
chr15:88899407|88901659 hsa-miR-7161-3p 1 1 0
chr15:88899407|88901659 hsa-miR-6501-5p 1 1 0
chr15:88899407|88901659 hsa-miR-6717-5p 1 1 0
chr15:88899407|88901659 hsa-miR-6736-3p 0 1 0
chr15:88899407|88901659 hsa-miR-7156-3p 1 1 0
chr15:88899407|88901659 hsa-miR-1289 0 1 0
chr15:88899407|88901659 hsa-miR-4695-3p 1 0 0
chr15:88899407|88901659 hsa-miR-1910-5p 0 1 0
chr15:88899407|88901659 hsa-miR-106b-3p 0 1 0
chr15:88899407|88901659 hsa-miR-6773-3p 0 1 0
chr15:88899407|88901659 hsa-miR-2277-5p 1 0 0
chr15:88899407|88901659 hsa-miR-493-3p 1 1 0
chr15:88899407|88901659 hsa-miR-3173-5p 0 1 0
chr15:88899407|88901659 hsa-miR-6838-3p 0 1 0
chr15:88899407|88901659 hsa-miR-4714-3p 0 1 0
chr15:88899407|88901659 hsa-miR-1207-5p 1 0 0
chr15:88899407|88901659 hsa-miR-1233-5p 1 0 0
chr15:88899407|88901659 hsa-miR-4763-3p 1 0 0
chr15:88899407|88901659 hsa-miR-6787-5p 1 0 0
chr15:88899407|88901659 hsa-miR-6743-5p 1 0 0
chr15:88899407|88901659 hsa-miR-6752-5p 1 0 0
chr15:88899407|88901659 hsa-miR-6756-5p 1 0 0
chr15:88899407|88901659 hsa-miR-6842-5p 1 0 0
chr15:88899407|88901659 hsa-miR-6851-5p 1 0 0
chr15:88899407|88901659 hsa-miR-1249-5p 1 0 0
chr15:88899407|88901659 hsa-miR-6722-3p 1 0 0
chr15:88899407|88901659 hsa-miR-6780a-5p 1 1 0
chr15:88899407|88901659 hsa-miR-1915-3p 1 0 0
chr15:88899407|88901659 hsa-miR-4728-5p 1 0 0
chr15:88899407|88901659 hsa-miR-6836-5p 1 0 0
chr15:88899407|88901659 hsa-miR-10396a-5p 1 0 0
chr15:88899407|88901659 hsa-miR-10396b-5p 1 0 0
chr15:88899407|88901659 hsa-miR-4649-5p 1 0 0
chr15:88899407|88901659 hsa-miR-4701-3p 0 1 0
chr15:88899407|88901659 hsa-miR-3085-5p 0 1 0
chr15:88899407|88901659 hsa-miR-7843-5p 1 0 0
chr15:88899407|88901659 hsa-miR-1914-3p 1 1 0
chr15:88899407|88901659 hsa-miR-6736-5p 0 1 0
chr15:88899407|88901659 hsa-miR-6855-5p 0 1 0
chr15:88899407|88901659 hsa-miR-7151-3p 1 1 0
chr15:88899407|88901659 hsa-miR-6891-5p 1 0 0
chr15:88899407|88901659 hsa-miR-9851-3p 1 0 0
chr15:88899407|88901659 hsa-miR-6819-3p 1 0 0
chr15:88899407|88901659 hsa-miR-6783-3p 0 1 0
chr15:88899407|88901659 hsa-miR-3619-5p 1 0 0
chr15:88899407|88901659 hsa-miR-151a-5p 0 1 0
chr15:88899407|88901659 hsa-miR-10524-5p 0 1 0
chr15:88899407|88901659 hsa-miR-494-5p 0 1 0
chr15:88899407|88901659 hsa-miR-6874-3p 0 1 0
chr15:88899407|88901659 hsa-miR-200a-5p 0 1 0
chr15:88899407|88901659 hsa-miR-495-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr15:88899407|88901659
ORF Type ORF1
Protein Length 30
Nucleotide Length 93
Protein Sequence LGLASLQLEPLLCTAGQAGQLQRLGCGELR
Nucleotide Sequence CTGGGGCTTGCATCTCTTCAGCTGGAACCCCTCCTATGCACGGCTGGACAAGCAGGGCAACTTCAACGCCTGGGTTGCGGGGAGCTACGGTAA
CircID chr15:88899407|88901659
ORF Type ORF2
Protein Length 128
Nucleotide Length 384
Protein Sequence MHLFSWNPSYARLDKQGNFNAWVAGSYGNDQWLQVDLGSSKEVTGIITQGARNFGSVQFVASYKVAYSNDSANWTEYQDPRTGSSKIFPGNWDNHSHKKNLFETPILARYVRILPVAWHNRIALRLEL
Nucleotide Sequence TTGCATCTCTTCAGCTGGAACCCCTCCTATGCACGGCTGGACAAGCAGGGCAACTTCAACGCCTGGGTTGCGGGGAGCTACGGTAACGATCAGTGGCTGCAGGTGGACCTGGGCTCCTCGAAGGAGGTGACAGGCATCATCACCCAGGGGGCCCGTAACTTTGGCTCTGTCCAGTTTGTGGCATCCTACAAGGTTGCCTACAGTAATGACAGTGCGAACTGGACTGAGTACCAGGACCCCAGGACTGGCAGCAGTAAGATCTTCCCTGGCAACTGGGACAACCACTCCCACAAGAAGAACTTGTTTGAGACGCCCATCCTGGCTCGCTATGTGCGCATCCTGCCTGTAGCCTGGCACAACCGCATCGCCCTGCGCCTGGAGCTG
CircID chr15:88899407|88901659
ORF Type ORF3
Protein Length 33
Nucleotide Length 102
Protein Sequence MHGWTSRATSTPGLRGATVTISGCRWTWAPRRR
Nucleotide Sequence ATGCACGGCTGGACAAGCAGGGCAACTTCAACGCCTGGGTTGCGGGGAGCTACGGTAACGATCAGTGGCTGCAGGTGGACCTGGGCTCCTCGAAGGAGGTGA
CircID chr15:88899407|88901659
ORF Type ORF4
Protein Length 62
Nucleotide Length 189
Protein Sequence MALSSLWHPTRLPTVMTVRTGLSTRTPGLAAVRSSLATGTTTPTRRTCLRRPSWLAMCASCL
Nucleotide Sequence TTGGCTCTGTCCAGTTTGTGGCATCCTACAAGGTTGCCTACAGTAATGACAGTGCGAACTGGACTGAGTACCAGGACCCCAGGACTGGCAGCAGTAAGATCTTCCCTGGCAACTGGGACAACCACTCCCACAAGAAGAACTTGTTTGAGACGCCCATCCTGGCTCGCTATGTGCGCATCCTGCCTGTAG
CircID chr15:88899407|88901659
ORF Type ORF5
Protein Length 80
Nucleotide Length 240
Protein Sequence MVLSPVRTVITVGNLVGCHKLDRAKVTGPLGDDACHLLRGAQVHLQPLIVTVAPRNPGVEVALLVQPCIGGVPAEEMQAP
Nucleotide Sequence CTGGTACTCAGTCCAGTTCGCACTGTCATTACTGTAGGCAACCTTGTAGGATGCCACAAACTGGACAGAGCCAAAGTTACGGGCCCCCTGGGTGATGATGCCTGTCACCTCCTTCGAGGAGCCCAGGTCCACCTGCAGCCACTGATCGTTACCGTAGCTCCCCGCAACCCAGGCGTTGAAGTTGCCCTGCTTGTCCAGCCGTGCATAGGAGGGGTTCCAGCTGAAGAGATGCAAGCCCCA
CircID chr15:88899407|88901659
ORF Type ORF6
Protein Length 39
Nucleotide Length 120
Protein Sequence MGVSNKFFLWEWLSQLPGKILLLPVLGSWYSVQFALSLL
Nucleotide Sequence ATGGGCGTCTCAAACAAGTTCTTCTTGTGGGAGTGGTTGTCCCAGTTGCCAGGGAAGATCTTACTGCTGCCAGTCCTGGGGTCCTGGTACTCAGTCCAGTTCGCACTGTCATTACTGTAG
CircID chr15:88899407|88901659
ORF Type ORF7
Protein Length 25
Nucleotide Length 78
Protein Sequence MSPPSRSPGPPAATDRYRSSPQPRR
Nucleotide Sequence CTGTCACCTCCTTCGAGGAGCCCAGGTCCACCTGCAGCCACTGATCGTTACCGTAGCTCCCCGCAACCCAGGCGTTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab