CircRNA Information

General Information
circRNA Basic Information
CircID chr15:89318693|89318988
Strand +
CircType exon
Host Gene ENSG00000140521.10;
Algorism CIRI2;
Sequence CCCGGTGCTGGGCTGCTGCATCAGCCGAGCCCTGGAGCCCTCGGCTGTCCAGGAAGAGGTATCTTGCTACCTTTGGAGCATGGGCAGAGGGGCCCCAGGGAGGGCAGGGCAGAGCTCCCTGTGGACCTTACCAATGTTTGTAGGTAGGGCCAGAGTGAAGCTTCTCTTGGGGCTTCTACCCTGGAGTTAATTGGTATGTAGCATAGCCCCTTTCACCTCTGCCCACCTTCCCTTCCCAGTTTATGACCAGCCGTGTGAATTGGGTGGTACAGAGCTCTGCTGTTGACTACTTACAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr15:89318693|89318988 hsa-miR-107 0 0 1
chr15:89318693|89318988 hsa-miR-221-5p 0 0 1
chr15:89318693|89318988 hsa-miR-221-3p 0 0 1
chr15:89318693|89318988 hsa-miR-222-5p 0 0 1
chr15:89318693|89318988 hsa-miR-222-3p 0 0 1
chr15:89318693|89318988 hsa-miR-377-5p 0 0 1
chr15:89318693|89318988 hsa-miR-377-3p 0 0 1
chr15:89318693|89318988 hsa-miR-328-5p 0 0 1
chr15:89318693|89318988 hsa-miR-328-3p 0 0 1
chr15:89318693|89318988 hsa-miR-488-5p 0 0 1
chr15:89318693|89318988 hsa-miR-488-3p 0 0 1
chr15:89318693|89318988 hsa-miR-505-5p 0 0 1
chr15:89318693|89318988 hsa-miR-505-3p 0 0 1
chr15:89318693|89318988 hsa-miR-562 0 0 1
chr15:89318693|89318988 hsa-miR-421 0 0 1
chr15:89318693|89318988 hsa-miR-874-5p 0 0 1
chr15:89318693|89318988 hsa-miR-874-3p 0 0 1
chr15:89318693|89318988 hsa-miR-541-5p 0 0 1
chr15:89318693|89318988 hsa-miR-541-3p 0 0 1
chr15:89318693|89318988 hsa-miR-920 0 0 1
chr15:89318693|89318988 hsa-miR-922 0 1 1
chr15:89318693|89318988 hsa-miR-1236-5p 0 0 1
chr15:89318693|89318988 hsa-miR-1236-3p 0 0 1
chr15:89318693|89318988 hsa-miR-1291 0 0 1
chr15:89318693|89318988 hsa-miR-548g-5p 0 0 1
chr15:89318693|89318988 hsa-miR-548g-3p 0 0 1
chr15:89318693|89318988 hsa-miR-548m 0 0 1
chr15:89318693|89318988 hsa-miR-296-5p 0 1 1
chr15:89318693|89318988 hsa-miR-1283 0 0 1
chr15:89318693|89318988 hsa-miR-146b-3p 0 0 1
chr15:89318693|89318988 hsa-miR-654-5p 0 0 1
chr15:89318693|89318988 hsa-miR-508-5p 0 0 1
chr15:89318693|89318988 hsa-miR-875-5p 0 0 1
chr15:89318693|89318988 hsa-miR-324-3p 0 0 1
chr15:89318693|89318988 hsa-miR-103 0 0 1
chr15:89318693|89318988 hsa-miR-220c 0 0 1
chr15:89318693|89318988 hsa-miR-612 1 0 0
chr15:89318693|89318988 hsa-miR-637 0 1 0
chr15:89318693|89318988 hsa-miR-762 1 0 0
chr15:89318693|89318988 hsa-miR-3132 1 1 0
chr15:89318693|89318988 hsa-miR-3141 1 0 0
chr15:89318693|89318988 hsa-miR-3147 1 0 0
chr15:89318693|89318988 hsa-miR-4257 0 1 0
chr15:89318693|89318988 hsa-miR-3652 1 0 0
chr15:89318693|89318988 hsa-miR-3929 0 1 0
chr15:89318693|89318988 hsa-miR-3937 1 0 0
chr15:89318693|89318988 hsa-miR-3943 1 0 0
chr15:89318693|89318988 hsa-miR-4430 1 0 0
chr15:89318693|89318988 hsa-miR-4489 0 1 0
chr15:89318693|89318988 hsa-miR-4505 1 0 0
chr15:89318693|89318988 hsa-miR-4651 1 0 0
chr15:89318693|89318988 hsa-miR-4656 1 0 0
chr15:89318693|89318988 hsa-miR-4672 1 0 0
chr15:89318693|89318988 hsa-miR-4675 1 0 0
chr15:89318693|89318988 hsa-miR-4710 1 0 0
chr15:89318693|89318988 hsa-miR-4721 0 1 0
chr15:89318693|89318988 hsa-miR-451b 0 1 0
chr15:89318693|89318988 hsa-miR-4739 1 1 0
chr15:89318693|89318988 hsa-miR-5685 0 1 0
chr15:89318693|89318988 hsa-miR-5787 1 0 0
chr15:89318693|89318988 hsa-miR-6090 1 0 0
chr15:89318693|89318988 hsa-miR-6131 1 1 0
chr15:89318693|89318988 hsa-miR-6860 1 0 0
chr15:89318693|89318988 hsa-miR-7150 1 0 0
chr15:89318693|89318988 hsa-miR-7515 0 1 0
chr15:89318693|89318988 hsa-miR-7974 1 0 0
chr15:89318693|89318988 hsa-miR-8072 1 0 0
chr15:89318693|89318988 hsa-miR-8075 0 1 0
chr15:89318693|89318988 hsa-miR-8089 1 0 0
chr15:89318693|89318988 hsa-miR-9500 0 1 0
chr15:89318693|89318988 hsa-miR-18a-3p 0 1 0
chr15:89318693|89318988 hsa-miR-6734-5p 1 0 0
chr15:89318693|89318988 hsa-miR-3194-3p 0 1 0
chr15:89318693|89318988 hsa-miR-671-5p 0 1 0
chr15:89318693|89318988 hsa-miR-6861-5p 1 0 0
chr15:89318693|89318988 hsa-miR-6822-3p 1 0 0
chr15:89318693|89318988 hsa-miR-6799-5p 1 1 0
chr15:89318693|89318988 hsa-miR-6728-5p 1 0 0
chr15:89318693|89318988 hsa-miR-7160-5p 1 0 0
chr15:89318693|89318988 hsa-miR-197-5p 1 1 0
chr15:89318693|89318988 hsa-miR-3189-5p 1 0 0
chr15:89318693|89318988 hsa-miR-6716-5p 1 0 0
chr15:89318693|89318988 hsa-miR-6796-3p 0 1 0
chr15:89318693|89318988 hsa-miR-2467-3p 0 1 0
chr15:89318693|89318988 hsa-miR-6782-5p 1 0 0
chr15:89318693|89318988 hsa-miR-6728-3p 0 1 0
chr15:89318693|89318988 hsa-miR-7855-5p 0 1 0
chr15:89318693|89318988 hsa-miR-1343-3p 0 1 0
chr15:89318693|89318988 hsa-miR-5088-5p 0 1 0
chr15:89318693|89318988 hsa-miR-1226-5p 0 1 0
chr15:89318693|89318988 hsa-miR-204-3p 0 1 0
chr15:89318693|89318988 hsa-miR-1229-5p 1 0 0
chr15:89318693|89318988 hsa-miR-7113-3p 0 1 0
chr15:89318693|89318988 hsa-miR-1228-5p 1 0 0
chr15:89318693|89318988 hsa-miR-6771-5p 1 0 0
chr15:89318693|89318988 hsa-miR-92b-5p 1 0 0
chr15:89318693|89318988 hsa-miR-4446-3p 1 0 0
chr15:89318693|89318988 hsa-miR-149-3p 1 0 0
chr15:89318693|89318988 hsa-miR-6824-5p 1 0 0
chr15:89318693|89318988 hsa-miR-339-5p 0 1 0
chr15:89318693|89318988 hsa-miR-4638-5p 0 1 0
chr15:89318693|89318988 hsa-miR-3944-5p 0 1 0
chr15:89318693|89318988 hsa-miR-519d-5p 0 1 0
chr15:89318693|89318988 hsa-miR-2276-5p 0 1 0
chr15:89318693|89318988 hsa-miR-6837-3p 0 1 0
chr15:89318693|89318988 hsa-miR-4749-3p 0 1 0
chr15:89318693|89318988 hsa-miR-6794-3p 0 1 0
chr15:89318693|89318988 hsa-miR-3177-3p 1 0 0
chr15:89318693|89318988 hsa-miR-3173-5p 0 1 0
chr15:89318693|89318988 hsa-miR-1207-5p 1 0 0
chr15:89318693|89318988 hsa-miR-4763-3p 1 0 0
chr15:89318693|89318988 hsa-miR-6769b-5p 1 0 0
chr15:89318693|89318988 hsa-miR-6778-5p 1 0 0
chr15:89318693|89318988 hsa-miR-6812-5p 1 0 0
chr15:89318693|89318988 hsa-miR-6865-5p 1 0 0
chr15:89318693|89318988 hsa-miR-6726-5p 0 1 0
chr15:89318693|89318988 hsa-miR-6743-5p 1 0 0
chr15:89318693|89318988 hsa-miR-6752-5p 1 0 0
chr15:89318693|89318988 hsa-miR-6754-5p 1 1 0
chr15:89318693|89318988 hsa-miR-6756-5p 1 0 0
chr15:89318693|89318988 hsa-miR-6813-5p 1 0 0
chr15:89318693|89318988 hsa-miR-6851-5p 1 0 0
chr15:89318693|89318988 hsa-miR-1249-5p 1 0 0
chr15:89318693|89318988 hsa-miR-6779-5p 1 0 0
chr15:89318693|89318988 hsa-miR-6780a-5p 1 0 0
chr15:89318693|89318988 hsa-miR-6797-5p 1 1 0
chr15:89318693|89318988 hsa-miR-4728-5p 1 0 0
chr15:89318693|89318988 hsa-miR-5196-5p 1 1 0
chr15:89318693|89318988 hsa-miR-6780b-5p 1 1 0
chr15:89318693|89318988 hsa-miR-4685-5p 0 1 0
chr15:89318693|89318988 hsa-miR-6735-5p 1 0 0
chr15:89318693|89318988 hsa-miR-6846-5p 1 0 0
chr15:89318693|89318988 hsa-miR-6858-5p 1 0 0
chr15:89318693|89318988 hsa-miR-6883-5p 1 0 0
chr15:89318693|89318988 hsa-miR-6831-5p 1 0 0
chr15:89318693|89318988 hsa-miR-939-5p 1 0 0
chr15:89318693|89318988 hsa-miR-4646-5p 1 1 0
chr15:89318693|89318988 hsa-miR-4747-5p 0 1 0
chr15:89318693|89318988 hsa-miR-6785-5p 1 0 0
chr15:89318693|89318988 hsa-miR-5591-5p 0 1 0
chr15:89318693|89318988 hsa-miR-6791-5p 0 1 0
chr15:89318693|89318988 hsa-miR-6805-3p 0 1 0
chr15:89318693|89318988 hsa-miR-6775-3p 1 0 0
chr15:89318693|89318988 hsa-miR-4723-3p 0 1 0
chr15:89318693|89318988 hsa-miR-6744-3p 0 1 0
chr15:89318693|89318988 hsa-miR-6500-5p 1 0 0
chr15:89318693|89318988 hsa-miR-4690-3p 0 1 0
chr15:89318693|89318988 hsa-miR-708-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr15:89318693|89318988
ORF Type ORF1
Protein Length 44
Nucleotide Length 135
Protein Sequence MLHQPSPGALGCPGRGILLPLEHGQRGPREGRAELPVDLTNVCR
Nucleotide Sequence CTGCTGCATCAGCCGAGCCCTGGAGCCCTCGGCTGTCCAGGAAGAGGTATCTTGCTACCTTTGGAGCATGGGCAGAGGGGCCCCAGGGAGGGCAGGGCAGAGCTCCCTGTGGACCTTACCAATGTTTGTAGGTAG
CircID chr15:89318693|89318988
ORF Type ORF2
Protein Length 60
Nucleotide Length 183
Protein Sequence MGCCISRALEPSAVQEEVSCYLWSMGRGAPGRAGQSSLWTLPMFVGRARVKLLLGLLPWS
Nucleotide Sequence CTGGGCTGCTGCATCAGCCGAGCCCTGGAGCCCTCGGCTGTCCAGGAAGAGGTATCTTGCTACCTTTGGAGCATGGGCAGAGGGGCCCCAGGGAGGGCAGGGCAGAGCTCCCTGTGGACCTTACCAATGTTTGTAGGTAGGGCCAGAGTGAAGCTTCTCTTGGGGCTTCTACCCTGGAGTTAA
CircID chr15:89318693|89318988
ORF Type ORF3
Protein Length 31
Nucleotide Length 96
Protein Sequence MVCSIAPFTSAHLPFPVYDQPCELGGTELCC
Nucleotide Sequence TTGGTATGTAGCATAGCCCCTTTCACCTCTGCCCACCTTCCCTTCCCAGTTTATGACCAGCCGTGTGAATTGGGTGGTACAGAGCTCTGCTGTTGA
CircID chr15:89318693|89318988
ORF Type ORF4
Protein Length 32
Nucleotide Length 99
Protein Sequence MSRKRYLATFGAWAEGPQGGQGRAPCGPYQCL
Nucleotide Sequence CTGTCCAGGAAGAGGTATCTTGCTACCTTTGGAGCATGGGCAGAGGGGCCCCAGGGAGGGCAGGGCAGAGCTCCCTGTGGACCTTACCAATGTTTGTAG
CircID chr15:89318693|89318988
ORF Type ORF5
Protein Length 26
Nucleotide Length 78
Protein Sequence MPTFPSQFMTSRVNWVVQSSAVDYLH
Nucleotide Sequence CTGCCCACCTTCCCTTCCCAGTTTATGACCAGCCGTGTGAATTGGGTGGTACAGAGCTCTGCTGTTGACTACTTACAC
CircID chr15:89318693|89318988
ORF Type ORF6
Protein Length 37
Nucleotide Length 114
Protein Sequence MVRSTGSSALPSLGPLCPCSKGSKIPLPGQPRAPGLG
Nucleotide Sequence TTGGTAAGGTCCACAGGGAGCTCTGCCCTGCCCTCCCTGGGGCCCCTCTGCCCATGCTCCAAAGGTAGCAAGATACCTCTTCCTGGACAGCCGAGGGCTCCAGGGCTCGGCTGA
CircID chr15:89318693|89318988
ORF Type ORF7
Protein Length 37
Nucleotide Length 111
Protein Sequence MPCPPWGPSAHAPKVARYLFLDSRGLQGSADAAAQHR
Nucleotide Sequence CTGCCCTGCCCTCCCTGGGGCCCCTCTGCCCATGCTCCAAAGGTAGCAAGATACCTCTTCCTGGACAGCCGAGGGCTCCAGGGCTCGGCTGATGCAGCAGCCCAGCACCGG
CircID chr15:89318693|89318988
ORF Type ORF8
Protein Length 28
Nucleotide Length 87
Protein Sequence MALPTNIGKVHRELCPALPGAPLPMLQR
Nucleotide Sequence CTGGCCCTACCTACAAACATTGGTAAGGTCCACAGGGAGCTCTGCCCTGCCCTCCCTGGGGCCCCTCTGCCCATGCTCCAAAGGTAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab