CircRNA Information

General Information
circRNA Basic Information
CircID chr15:89477566|89477943
Strand -
CircType exon
Host Gene ENSG00000140519.11;
Algorism CIRI2;
Sequence CCACGATGCCGCCTATGATGCCAGGAATGCCATGCAGATTGTTAATGCCACATGTGTCCTGGATGTGCAGCCGGGACTCCAGGAATGGCTGGAGACGGGAGGTGGGTGCTGCTCAGGCCGGGGGCTGCATCAAGGGTGTGGGGAGGCCGGGATTCCAGAGACCCAGGATTCTCTAGCCCTCAGCCCCCTCCCTAGGAACCCTCAGCTCACTGTCAGGAACACAAAGACCTCAGCATTCTCTAGCCCCCAGCCCCTTGCCTGGGGCACTTACGGTCAGGTATACAAAACCCAGGGTGGAGATGATGCCGCAGACGAAGCCGATGATGAGGGCACCGTAAGGCATGAGCATCATCTCAGCAGCGGTACCCACGGCCACCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr15:89477566|89477943 hsa-miR-15a-5p 0 0 1
chr15:89477566|89477943 hsa-miR-15a-3p 0 0 1
chr15:89477566|89477943 hsa-miR-15b-5p 0 0 1
chr15:89477566|89477943 hsa-miR-15b-3p 0 0 1
chr15:89477566|89477943 hsa-miR-143-5p 0 0 1
chr15:89477566|89477943 hsa-miR-143-3p 0 0 1
chr15:89477566|89477943 hsa-miR-195-5p 0 0 1
chr15:89477566|89477943 hsa-miR-195-3p 0 0 1
chr15:89477566|89477943 hsa-miR-302a-5p 0 0 1
chr15:89477566|89477943 hsa-miR-302a-3p 0 0 1
chr15:89477566|89477943 hsa-miR-302b-5p 0 0 1
chr15:89477566|89477943 hsa-miR-302b-3p 0 0 1
chr15:89477566|89477943 hsa-miR-302c-5p 0 0 1
chr15:89477566|89477943 hsa-miR-302c-3p 0 0 1
chr15:89477566|89477943 hsa-miR-302d-5p 0 0 1
chr15:89477566|89477943 hsa-miR-302d-3p 0 0 1
chr15:89477566|89477943 hsa-miR-372-5p 0 0 1
chr15:89477566|89477943 hsa-miR-372-3p 0 0 1
chr15:89477566|89477943 hsa-miR-373-5p 0 0 1
chr15:89477566|89477943 hsa-miR-373-3p 0 0 1
chr15:89477566|89477943 hsa-miR-326 0 0 1
chr15:89477566|89477943 hsa-miR-384 0 0 1
chr15:89477566|89477943 hsa-miR-424-5p 0 0 1
chr15:89477566|89477943 hsa-miR-424-3p 0 0 1
chr15:89477566|89477943 hsa-miR-497-5p 0 0 1
chr15:89477566|89477943 hsa-miR-497-3p 0 0 1
chr15:89477566|89477943 hsa-miR-520e-5p 0 0 1
chr15:89477566|89477943 hsa-miR-520e-3p 0 0 1
chr15:89477566|89477943 hsa-miR-520b-5p 0 0 1
chr15:89477566|89477943 hsa-miR-520b-3p 0 0 1
chr15:89477566|89477943 hsa-miR-558 0 0 1
chr15:89477566|89477943 hsa-miR-568 0 0 1
chr15:89477566|89477943 hsa-miR-593-5p 0 0 1
chr15:89477566|89477943 hsa-miR-593-3p 0 0 1
chr15:89477566|89477943 hsa-miR-599 0 0 1
chr15:89477566|89477943 hsa-miR-629-5p 0 0 1
chr15:89477566|89477943 hsa-miR-629-3p 0 0 1
chr15:89477566|89477943 hsa-miR-637 1 1 1
chr15:89477566|89477943 hsa-miR-766-5p 0 0 1
chr15:89477566|89477943 hsa-miR-766-3p 0 0 1
chr15:89477566|89477943 hsa-miR-665 0 0 1
chr15:89477566|89477943 hsa-miR-1234-3p 0 0 1
chr15:89477566|89477943 hsa-miR-1200 0 0 1
chr15:89477566|89477943 hsa-miR-1299 0 1 1
chr15:89477566|89477943 hsa-miR-1247-5p 0 0 1
chr15:89477566|89477943 hsa-miR-1247-3p 0 0 1
chr15:89477566|89477943 hsa-miR-1256 0 0 1
chr15:89477566|89477943 hsa-miR-302e 0 0 1
chr15:89477566|89477943 hsa-miR-1321 0 0 1
chr15:89477566|89477943 hsa-miR-1322 0 0 1
chr15:89477566|89477943 hsa-miR-1197 0 1 1
chr15:89477566|89477943 hsa-miR-1234 0 0 1
chr15:89477566|89477943 hsa-miR-193a-5p 0 0 1
chr15:89477566|89477943 hsa-miR-1289 0 1 1
chr15:89477566|89477943 hsa-miR-1225-5p 0 0 1
chr15:89477566|89477943 hsa-miR-1224-3p 1 1 1
chr15:89477566|89477943 hsa-miR-532-5p 0 0 1
chr15:89477566|89477943 hsa-miR-875-5p 0 0 1
chr15:89477566|89477943 hsa-miR-875-3p 0 0 1
chr15:89477566|89477943 hsa-miR-330-5p 1 0 1
chr15:89477566|89477943 hsa-miR-520d-3p 0 0 1
chr15:89477566|89477943 hsa-miR-519b-3p 0 0 1
chr15:89477566|89477943 hsa-miR-519c-3p 0 0 1
chr15:89477566|89477943 hsa-miR-520a-3p 0 0 1
chr15:89477566|89477943 hsa-miR-520c-3p 0 0 1
chr15:89477566|89477943 hsa-miR-16 0 0 1
chr15:89477566|89477943 hsa-miR-519a 0 0 1
chr15:89477566|89477943 hsa-miR-608 0 1 0
chr15:89477566|89477943 hsa-miR-661 1 1 0
chr15:89477566|89477943 hsa-miR-762 1 1 0
chr15:89477566|89477943 hsa-miR-3132 1 0 0
chr15:89477566|89477943 hsa-miR-4309 0 1 0
chr15:89477566|89477943 hsa-miR-4254 0 1 0
chr15:89477566|89477943 hsa-miR-3652 1 0 0
chr15:89477566|89477943 hsa-miR-3943 0 1 0
chr15:89477566|89477943 hsa-miR-4449 0 1 0
chr15:89477566|89477943 hsa-miR-4487 1 0 0
chr15:89477566|89477943 hsa-miR-4489 1 1 0
chr15:89477566|89477943 hsa-miR-4492 0 1 0
chr15:89477566|89477943 hsa-miR-4498 1 1 0
chr15:89477566|89477943 hsa-miR-4507 1 0 0
chr15:89477566|89477943 hsa-miR-4508 1 0 0
chr15:89477566|89477943 hsa-miR-4526 1 1 0
chr15:89477566|89477943 hsa-miR-1587 1 0 0
chr15:89477566|89477943 hsa-miR-4642 1 1 0
chr15:89477566|89477943 hsa-miR-4656 1 1 0
chr15:89477566|89477943 hsa-miR-4657 1 0 0
chr15:89477566|89477943 hsa-miR-4673 0 1 0
chr15:89477566|89477943 hsa-miR-4686 1 0 0
chr15:89477566|89477943 hsa-miR-4721 1 0 0
chr15:89477566|89477943 hsa-miR-4739 1 1 0
chr15:89477566|89477943 hsa-miR-4780 0 1 0
chr15:89477566|89477943 hsa-miR-5787 1 1 0
chr15:89477566|89477943 hsa-miR-6069 0 1 0
chr15:89477566|89477943 hsa-miR-6085 1 1 0
chr15:89477566|89477943 hsa-miR-8073 1 1 0
chr15:89477566|89477943 hsa-miR-8089 1 1 0
chr15:89477566|89477943 hsa-miR-29b-1-5p 1 0 0
chr15:89477566|89477943 hsa-miR-4731-5p 1 1 0
chr15:89477566|89477943 hsa-miR-7155-5p 0 1 0
chr15:89477566|89477943 hsa-miR-4665-3p 1 0 0
chr15:89477566|89477943 hsa-miR-6836-3p 1 0 0
chr15:89477566|89477943 hsa-miR-6861-5p 1 0 0
chr15:89477566|89477943 hsa-miR-7160-5p 1 1 0
chr15:89477566|89477943 hsa-miR-6840-5p 0 1 0
chr15:89477566|89477943 hsa-miR-23b-5p 1 1 0
chr15:89477566|89477943 hsa-miR-197-5p 1 0 0
chr15:89477566|89477943 hsa-miR-7108-5p 1 0 0
chr15:89477566|89477943 hsa-miR-6793-5p 1 0 0
chr15:89477566|89477943 hsa-miR-185-3p 0 1 0
chr15:89477566|89477943 hsa-miR-6805-5p 0 1 0
chr15:89477566|89477943 hsa-miR-23a-5p 1 1 0
chr15:89477566|89477943 hsa-miR-6821-5p 1 0 0
chr15:89477566|89477943 hsa-miR-1343-3p 1 1 0
chr15:89477566|89477943 hsa-miR-6835-5p 1 0 0
chr15:89477566|89477943 hsa-miR-939-3p 1 0 0
chr15:89477566|89477943 hsa-miR-1226-5p 0 1 0
chr15:89477566|89477943 hsa-miR-7161-3p 1 0 0
chr15:89477566|89477943 hsa-miR-149-3p 1 1 0
chr15:89477566|89477943 hsa-miR-941 1 0 0
chr15:89477566|89477943 hsa-miR-1306-5p 0 1 0
chr15:89477566|89477943 hsa-miR-4707-5p 0 1 0
chr15:89477566|89477943 hsa-miR-4742-5p 0 1 0
chr15:89477566|89477943 hsa-miR-5000-3p 0 1 0
chr15:89477566|89477943 hsa-miR-6778-3p 0 1 0
chr15:89477566|89477943 hsa-miR-4746-3p 1 0 0
chr15:89477566|89477943 hsa-miR-503-3p 1 0 0
chr15:89477566|89477943 hsa-miR-6734-3p 0 1 0
chr15:89477566|89477943 hsa-miR-6847-3p 0 1 0
chr15:89477566|89477943 hsa-miR-329-5p 0 1 0
chr15:89477566|89477943 hsa-miR-16-5p 0 1 0
chr15:89477566|89477943 hsa-miR-1207-5p 1 1 0
chr15:89477566|89477943 hsa-miR-4763-3p 1 1 0
chr15:89477566|89477943 hsa-miR-6812-5p 1 0 0
chr15:89477566|89477943 hsa-miR-5001-5p 1 0 0
chr15:89477566|89477943 hsa-miR-6756-5p 1 0 0
chr15:89477566|89477943 hsa-miR-6803-5p 1 0 0
chr15:89477566|89477943 hsa-miR-6813-5p 1 1 0
chr15:89477566|89477943 hsa-miR-7107-5p 0 1 0
chr15:89477566|89477943 hsa-miR-6722-3p 1 0 0
chr15:89477566|89477943 hsa-miR-6751-5p 1 0 0
chr15:89477566|89477943 hsa-miR-6797-5p 1 0 0
chr15:89477566|89477943 hsa-miR-3620-5p 1 0 0
chr15:89477566|89477943 hsa-miR-4728-5p 0 1 0
chr15:89477566|89477943 hsa-miR-5196-5p 1 0 0
chr15:89477566|89477943 hsa-miR-328-5p 1 1 0
chr15:89477566|89477943 hsa-miR-4726-5p 1 1 0
chr15:89477566|89477943 hsa-miR-6794-5p 1 0 0
chr15:89477566|89477943 hsa-miR-6846-5p 1 1 0
chr15:89477566|89477943 hsa-miR-6848-5p 1 1 0
chr15:89477566|89477943 hsa-miR-6883-5p 0 1 0
chr15:89477566|89477943 hsa-miR-4697-5p 1 0 0
chr15:89477566|89477943 hsa-miR-939-5p 1 0 0
chr15:89477566|89477943 hsa-miR-3198 0 1 0
chr15:89477566|89477943 hsa-miR-1914-3p 1 0 0
chr15:89477566|89477943 hsa-miR-6891-5p 1 0 0
chr15:89477566|89477943 hsa-miR-6785-5p 0 1 0
chr15:89477566|89477943 hsa-miR-6791-5p 1 0 0
chr15:89477566|89477943 hsa-miR-6512-3p 0 1 0
chr15:89477566|89477943 hsa-miR-6891-3p 0 1 0
chr15:89477566|89477943 hsa-miR-6783-3p 0 1 0
chr15:89477566|89477943 hsa-miR-6827-3p 0 1 0
chr15:89477566|89477943 hsa-miR-5588-5p 0 1 0
chr15:89477566|89477943 hsa-miR-340-3p 0 1 0
chr15:89477566|89477943 hsa-miR-4645-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr15:89477566|89477943
ORF Type ORF1
Protein Length 47
Nucleotide Length 144
Protein Sequence MCPGCAAGTPGMAGDGRWVLLRPGAASRVWGGRDSRDPGFSSPQPPP
Nucleotide Sequence ATGTGTCCTGGATGTGCAGCCGGGACTCCAGGAATGGCTGGAGACGGGAGGTGGGTGCTGCTCAGGCCGGGGGCTGCATCAAGGGTGTGGGGAGGCCGGGATTCCAGAGACCCAGGATTCTCTAGCCCTCAGCCCCCTCCCTAG
CircID chr15:89477566|89477943
ORF Type ORF2
Protein Length 115
Nucleotide Length 345
Protein Sequence MQIVNATCVLDVQPGLQEWLETGGGCCSGRGLHQGCGEAGIPETQDSLALSPLPRNPQLTVRNTKTSAFSSPQPLAWGTYGQVYKTQGGDDAADEADDEGTVRHEHHLSSGTHGH
Nucleotide Sequence ATGCAGATTGTTAATGCCACATGTGTCCTGGATGTGCAGCCGGGACTCCAGGAATGGCTGGAGACGGGAGGTGGGTGCTGCTCAGGCCGGGGGCTGCATCAAGGGTGTGGGGAGGCCGGGATTCCAGAGACCCAGGATTCTCTAGCCCTCAGCCCCCTCCCTAGGAACCCTCAGCTCACTGTCAGGAACACAAAGACCTCAGCATTCTCTAGCCCCCAGCCCCTTGCCTGGGGCACTTACGGTCAGGTATACAAAACCCAGGGTGGAGATGATGCCGCAGACGAAGCCGATGATGAGGGCACCGTAAGGCATGAGCATCATCTCAGCAGCGGTACCCACGGCCAC
CircID chr15:89477566|89477943
ORF Type ORF3
Protein Length 56
Nucleotide Length 171
Protein Sequence MPPMMPGMPCRLLMPHVSWMCSRDSRNGWRREVGAAQAGGCIKGVGRPGFQRPRIL
Nucleotide Sequence ATGCCGCCTATGATGCCAGGAATGCCATGCAGATTGTTAATGCCACATGTGTCCTGGATGTGCAGCCGGGACTCCAGGAATGGCTGGAGACGGGAGGTGGGTGCTGCTCAGGCCGGGGGCTGCATCAAGGGTGTGGGGAGGCCGGGATTCCAGAGACCCAGGATTCTCTAG
CircID chr15:89477566|89477943
ORF Type ORF4
Protein Length 42
Nucleotide Length 129
Protein Sequence MSGTQRPQHSLAPSPLPGALTVRYTKPRVEMMPQTKPMMRAP
Nucleotide Sequence CTGTCAGGAACACAAAGACCTCAGCATTCTCTAGCCCCCAGCCCCTTGCCTGGGGCACTTACGGTCAGGTATACAAAACCCAGGGTGGAGATGATGCCGCAGACGAAGCCGATGATGAGGGCACCGTAA
CircID chr15:89477566|89477943
ORF Type ORF5
Protein Length 38
Nucleotide Length 117
Protein Sequence MESRPPHTLDAAPGLSSTHLPSPAIPGVPAAHPGHMWH
Nucleotide Sequence CTGGAATCCCGGCCTCCCCACACCCTTGATGCAGCCCCCGGCCTGAGCAGCACCCACCTCCCGTCTCCAGCCATTCCTGGAGTCCCGGCTGCACATCCAGGACACATGTGGCATTAA
CircID chr15:89477566|89477943
ORF Type ORF6
Protein Length 40
Nucleotide Length 123
Protein Sequence MMLMPYGALIIGFVCGIISTLGFVYLTVSAPGKGLGAREC
Nucleotide Sequence ATGATGCTCATGCCTTACGGTGCCCTCATCATCGGCTTCGTCTGCGGCATCATCTCCACCCTGGGTTTTGTATACCTGACCGTAAGTGCCCCAGGCAAGGGGCTGGGGGCTAGAGAATGCTGA
CircID chr15:89477566|89477943
ORF Type ORF7
Protein Length 27
Nucleotide Length 81
Protein Sequence MESRLHIQDTCGINNLHGIPGIIGGIV
Nucleotide Sequence CTGGAGTCCCGGCTGCACATCCAGGACACATGTGGCATTAACAATCTGCATGGCATTCCTGGCATCATAGGCGGCATCGTG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab