CircRNA Information

General Information
circRNA Basic Information
CircID chr15:89799260|89799524
Strand -
CircType exon
Host Gene ENSG00000166825.12;
Algorism CIRI2;
Sequence CTGGCCAGGTTGAAGGCGTCATTAATGATCTGTGCCCGATTGATGACAGGGATGGCCTAGAATGCGAAGCACAGCATGTGACCATGGGTTGGCTGTGGGTGGCAGGCCTTGCAGTCTGGTGCCTGTCCTGGGGCAGGGGGCAGGGCGAGGGGTGGCAGACACTCACCGAGTGGTCTCTCTGCAGCTGAGTCTGAATCTTCCTCCAGTTCTCTTCGTCGTAGTTCACCCGGTAATAGCCCGTCACATTGAGGTTCAGCAGGACCCA
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr15:89799260|89799524 hsa-miR-146a-5p 0 0 1
chr15:89799260|89799524 hsa-miR-146a-3p 0 0 1
chr15:89799260|89799524 hsa-miR-370-5p 0 0 1
chr15:89799260|89799524 hsa-miR-370-3p 0 0 1
chr15:89799260|89799524 hsa-miR-346 0 1 1
chr15:89799260|89799524 hsa-miR-632 0 1 1
chr15:89799260|89799524 hsa-miR-636 0 0 1
chr15:89799260|89799524 hsa-miR-645 0 0 1
chr15:89799260|89799524 hsa-miR-765 0 0 1
chr15:89799260|89799524 hsa-miR-1249-5p 0 0 1
chr15:89799260|89799524 hsa-miR-1249-3p 0 0 1
chr15:89799260|89799524 hsa-miR-512-5p 0 1 1
chr15:89799260|89799524 hsa-miR-339-5p 0 1 1
chr15:89799260|89799524 hsa-miR-574-5p 0 0 1
chr15:89799260|89799524 hsa-miR-490-3p 0 0 1
chr15:89799260|89799524 hsa-miR-1207-3p 0 0 1
chr15:89799260|89799524 hsa-miR-324-3p 0 0 1
chr15:89799260|89799524 hsa-miR-146b-5p 0 0 1
chr15:89799260|89799524 hsa-miR-556-3p 0 0 1
chr15:89799260|89799524 hsa-miR-1274a 0 0 1
chr15:89799260|89799524 hsa-miR-1274b 0 0 1
chr15:89799260|89799524 hsa-miR-218 0 0 1
chr15:89799260|89799524 hsa-miR-637 1 0 0
chr15:89799260|89799524 hsa-miR-1913 0 1 0
chr15:89799260|89799524 hsa-miR-3125 1 0 0
chr15:89799260|89799524 hsa-miR-3131 1 0 0
chr15:89799260|89799524 hsa-miR-4313 0 1 0
chr15:89799260|89799524 hsa-miR-4269 0 1 0
chr15:89799260|89799524 hsa-miR-4436a 0 1 0
chr15:89799260|89799524 hsa-miR-4494 0 1 0
chr15:89799260|89799524 hsa-miR-4523 1 0 0
chr15:89799260|89799524 hsa-miR-4539 1 0 0
chr15:89799260|89799524 hsa-miR-4663 1 1 0
chr15:89799260|89799524 hsa-miR-4741 1 0 0
chr15:89799260|89799524 hsa-miR-4767 1 0 0
chr15:89799260|89799524 hsa-miR-5704 0 1 0
chr15:89799260|89799524 hsa-miR-12132 0 1 0
chr15:89799260|89799524 hsa-miR-6879-3p 1 1 0
chr15:89799260|89799524 hsa-miR-4665-3p 1 0 0
chr15:89799260|89799524 hsa-miR-6880-5p 1 0 0
chr15:89799260|89799524 hsa-miR-593-5p 0 1 0
chr15:89799260|89799524 hsa-miR-218-5p 0 1 0
chr15:89799260|89799524 hsa-miR-6726-3p 0 1 0
chr15:89799260|89799524 hsa-miR-6787-3p 0 1 0
chr15:89799260|89799524 hsa-miR-1915-5p 1 1 0
chr15:89799260|89799524 hsa-miR-423-3p 1 0 0
chr15:89799260|89799524 hsa-miR-4697-3p 0 1 0
chr15:89799260|89799524 hsa-miR-4655-3p 0 1 0
chr15:89799260|89799524 hsa-miR-6858-3p 0 1 0
chr15:89799260|89799524 hsa-miR-6803-3p 0 1 0
chr15:89799260|89799524 hsa-miR-4715-3p 0 1 0
chr15:89799260|89799524 hsa-miR-3925-5p 0 1 0
chr15:89799260|89799524 hsa-miR-3158-5p 1 1 0
chr15:89799260|89799524 hsa-miR-3922-5p 0 1 0
chr15:89799260|89799524 hsa-miR-6743-3p 0 1 0
chr15:89799260|89799524 hsa-miR-4638-5p 0 1 0
chr15:89799260|89799524 hsa-miR-4750-5p 0 1 0
chr15:89799260|89799524 hsa-miR-6752-3p 0 1 0
chr15:89799260|89799524 hsa-miR-4632-3p 0 1 0
chr15:89799260|89799524 hsa-miR-4529-5p 0 1 0
chr15:89799260|89799524 hsa-miR-6773-3p 0 1 0
chr15:89799260|89799524 hsa-miR-6795-3p 0 1 0
chr15:89799260|89799524 hsa-miR-3173-5p 0 1 0
chr15:89799260|89799524 hsa-miR-6812-3p 1 0 0
chr15:89799260|89799524 hsa-miR-676-5p 0 1 0
chr15:89799260|89799524 hsa-miR-6812-5p 1 0 0
chr15:89799260|89799524 hsa-miR-11181-3p 1 0 0
chr15:89799260|89799524 hsa-miR-6887-5p 1 0 0
chr15:89799260|89799524 hsa-miR-6799-3p 0 1 0
chr15:89799260|89799524 hsa-miR-4722-3p 0 1 0
chr15:89799260|89799524 hsa-miR-6727-3p 0 1 0
chr15:89799260|89799524 hsa-miR-6893-3p 0 1 0
chr15:89799260|89799524 hsa-miR-10401-3p 0 1 0
chr15:89799260|89799524 hsa-miR-6810-3p 0 1 0
chr15:89799260|89799524 hsa-miR-6775-3p 0 1 0
chr15:89799260|89799524 hsa-miR-9851-3p 0 1 0
chr15:89799260|89799524 hsa-miR-1234-3p 0 1 0
chr15:89799260|89799524 hsa-miR-363-5p 0 1 0
chr15:89799260|89799524 hsa-miR-4769-3p 1 1 0
chr15:89799260|89799524 hsa-miR-6715b-5p 0 1 0
chr15:89799260|89799524 hsa-miR-4423-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr15:89799260|89799524
ORF Type ORF1
Protein Length 46
Nucleotide Length 141
Protein Sequence MQSGACPGAGGRARGGRHSPSGLSAAESESSSSSLRRSSPGNSPSH
Nucleotide Sequence TTGCAGTCTGGTGCCTGTCCTGGGGCAGGGGGCAGGGCGAGGGGTGGCAGACACTCACCGAGTGGTCTCTCTGCAGCTGAGTCTGAATCTTCCTCCAGTTCTCTTCGTCGTAGTTCACCCGGTAATAGCCCGTCACATTGA
CircID chr15:89799260|89799524
ORF Type ORF2
Protein Length 68
Nucleotide Length 204
Protein Sequence MRSTACDHGLAVGGRPCSLVPVLGQGAGRGVADTHRVVSLQLSLNLPPVLFVVVHPVIARHIEVQQDP
Nucleotide Sequence ATGCGAAGCACAGCATGTGACCATGGGTTGGCTGTGGGTGGCAGGCCTTGCAGTCTGGTGCCTGTCCTGGGGCAGGGGGCAGGGCGAGGGGTGGCAGACACTCACCGAGTGGTCTCTCTGCAGCTGAGTCTGAATCTTCCTCCAGTTCTCTTCGTCGTAGTTCACCCGGTAATAGCCCGTCACATTGAGGTTCAGCAGGACCCA
CircID chr15:89799260|89799524
ORF Type ORF3
Protein Length 52
Nucleotide Length 159
Protein Sequence MCPIDDRDGLECEAQHVTMGWLWVAGLAVWCLSWGRGQGEGWQTLTEWSLCS
Nucleotide Sequence CTGTGCCCGATTGATGACAGGGATGGCCTAGAATGCGAAGCACAGCATGTGACCATGGGTTGGCTGTGGGTGGCAGGCCTTGCAGTCTGGTGCCTGTCCTGGGGCAGGGGGCAGGGCGAGGGGTGGCAGACACTCACCGAGTGGTCTCTCTGCAGCTGA
CircID chr15:89799260|89799524
ORF Type ORF4
Protein Length 86
Nucleotide Length 258
Protein Sequence MLNLNVTGYYRVNYDEENWRKIQTQLQRDHSVSVCHPSPCPLPQDRHQTARPATHSQPMVTCCASHSRPSLSSIGHRSLMTPSTWP
Nucleotide Sequence CTGCTGAACCTCAATGTGACGGGCTATTACCGGGTGAACTACGACGAAGAGAACTGGAGGAAGATTCAGACTCAGCTGCAGAGAGACCACTCGGTGAGTGTCTGCCACCCCTCGCCCTGCCCCCTGCCCCAGGACAGGCACCAGACTGCAAGGCCTGCCACCCACAGCCAACCCATGGTCACATGCTGTGCTTCGCATTCTAGGCCATCCCTGTCATCAATCGGGCACAGATCATTAATGACGCCTTCAACCTGGCCA
CircID chr15:89799260|89799524
ORF Type ORF5
Protein Length 30
Nucleotide Length 93
Protein Sequence MQGLPPTANPWSHAVLRILGHPCHQSGTDH
Nucleotide Sequence CTGCAAGGCCTGCCACCCACAGCCAACCCATGGTCACATGCTGTGCTTCGCATTCTAGGCCATCCCTGTCATCAATCGGGCACAGATCATTAA
CircID chr15:89799260|89799524
ORF Type ORF6
Protein Length 49
Nucleotide Length 150
Protein Sequence MEEDSDSAAERPLGECLPPLALPPAPGQAPDCKACHPQPTHGHMLCFAF
Nucleotide Sequence CTGGAGGAAGATTCAGACTCAGCTGCAGAGAGACCACTCGGTGAGTGTCTGCCACCCCTCGCCCTGCCCCCTGCCCCAGGACAGGCACCAGACTGCAAGGCCTGCCACCCACAGCCAACCCATGGTCACATGCTGTGCTTCGCATTCTAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab