CircRNA Information

General Information
circRNA Basic Information
CircID chr15:89908280|89910819
Strand -
CircType exon
Host Gene ENSG00000250021.7;ENSG00000242498.7;
Algorism find_circ;CIRI2;CIRC
Sequence GGGAAATGGTGTCCTGCTGGAGGGAGAACTGATCGATGTATCTCGGCACAGCATCTTGGACACTCATGGCAGGAAGGAGCGCTACTACGTGCTGTATATCCGGCCCAGTCACATCCATCGCCGTAAATTCGACGCCAAGGGAAATGAAATCGAGCCCAACTTCAGCGCCACCAGGAAGGTGAACACGGGCTTCCTCATGTCGTCCTACA
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr15:89908280|89910819 hsa-miR-146a-5p 0 0 1
chr15:89908280|89910819 hsa-miR-146a-3p 0 0 1
chr15:89908280|89910819 hsa-miR-370-5p 0 0 1
chr15:89908280|89910819 hsa-miR-370-3p 0 0 1
chr15:89908280|89910819 hsa-miR-432-5p 0 0 1
chr15:89908280|89910819 hsa-miR-432-3p 0 0 1
chr15:89908280|89910819 hsa-miR-522-5p 0 0 1
chr15:89908280|89910819 hsa-miR-522-3p 0 0 1
chr15:89908280|89910819 hsa-miR-602 0 0 1
chr15:89908280|89910819 hsa-miR-1287-5p 0 0 1
chr15:89908280|89910819 hsa-miR-1287-3p 0 0 1
chr15:89908280|89910819 hsa-miR-1307-5p 0 0 1
chr15:89908280|89910819 hsa-miR-1307-3p 0 0 1
chr15:89908280|89910819 hsa-miR-10a-3p 0 1 1
chr15:89908280|89910819 hsa-miR-1207-5p 1 0 1
chr15:89908280|89910819 hsa-miR-146b-5p 0 0 1
chr15:89908280|89910819 hsa-miR-369-5p 0 0 1
chr15:89908280|89910819 hsa-miR-516a-3p 0 0 1
chr15:89908280|89910819 hsa-miR-923 0 0 1
chr15:89908280|89910819 hsa-miR-650 1 0 0
chr15:89908280|89910819 hsa-miR-1321 0 1 0
chr15:89908280|89910819 hsa-miR-1469 1 0 0
chr15:89908280|89910819 hsa-miR-3646 0 1 0
chr15:89908280|89910819 hsa-miR-3135b 0 1 0
chr15:89908280|89910819 hsa-miR-4476 0 1 0
chr15:89908280|89910819 hsa-miR-4510 0 1 0
chr15:89908280|89910819 hsa-miR-4533 1 1 0
chr15:89908280|89910819 hsa-miR-4739 1 0 0
chr15:89908280|89910819 hsa-miR-5093 0 1 0
chr15:89908280|89910819 hsa-miR-6075 0 1 0
chr15:89908280|89910819 hsa-miR-6133 0 1 0
chr15:89908280|89910819 hsa-miR-7150 0 1 0
chr15:89908280|89910819 hsa-miR-8073 1 0 0
chr15:89908280|89910819 hsa-miR-8075 1 0 0
chr15:89908280|89910819 hsa-miR-6799-5p 1 1 0
chr15:89908280|89910819 hsa-miR-3692-5p 0 1 0
chr15:89908280|89910819 hsa-miR-4722-5p 1 0 0
chr15:89908280|89910819 hsa-miR-6727-5p 1 0 0
chr15:89908280|89910819 hsa-miR-6760-5p 0 1 0
chr15:89908280|89910819 hsa-miR-149-3p 1 0 0
chr15:89908280|89910819 hsa-miR-4740-5p 1 0 0
chr15:89908280|89910819 hsa-miR-5584-5p 0 1 0
chr15:89908280|89910819 hsa-miR-181b-5p 0 1 0
chr15:89908280|89910819 hsa-miR-3158-3p 1 0 0
chr15:89908280|89910819 hsa-miR-4999-5p 0 1 0
chr15:89908280|89910819 hsa-miR-3177-3p 0 1 0
chr15:89908280|89910819 hsa-miR-181a-5p 0 1 0
chr15:89908280|89910819 hsa-miR-4520-5p 0 1 0
chr15:89908280|89910819 hsa-miR-4763-3p 1 0 0
chr15:89908280|89910819 hsa-miR-6754-5p 1 0 0
chr15:89908280|89910819 hsa-miR-1249-5p 1 1 0
chr15:89908280|89910819 hsa-miR-6797-5p 1 1 0
chr15:89908280|89910819 hsa-miR-5196-5p 1 1 0
chr15:89908280|89910819 hsa-miR-3198 1 0 0
chr15:89908280|89910819 hsa-miR-6856-5p 1 0 0
chr15:89908280|89910819 hsa-miR-4747-5p 1 1 0
chr15:89908280|89910819 hsa-miR-6876-5p 0 1 0
chr15:89908280|89910819 hsa-miR-4756-5p 1 0 0
chr15:89908280|89910819 hsa-miR-7153-5p 0 1 0
chr15:89908280|89910819 hsa-miR-181d-5p 0 1 0
chr15:89908280|89910819 hsa-miR-4704-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


circRNA Open Reading Frame (ORF)
CircID chr15:89908280|89910819
ORF Type ORF1
Protein Length 39
Nucleotide Length 117
Protein Sequence MDVTGPDIQHVVALLPAMSVQDAVPRYIDQFSLQQDTIS
Nucleotide Sequence ATGGATGTGACTGGGCCGGATATACAGCACGTAGTAGCGCTCCTTCCTGCCATGAGTGTCCAAGATGCTGTGCCGAGATACATCGATCAGTTCTCCCTCCAGCAGGACACCATTTCC

CircID chr15:89908280|89910819
ORF Type ORF2
Protein Length 29
Nucleotide Length 90
Protein Sequence MRKPVFTFLVALKLGSISFPLASNLRRWM
Nucleotide Sequence ATGAGGAAGCCCGTGTTCACCTTCCTGGTGGCGCTGAAGTTGGGCTCGATTTCATTTCCCTTGGCGTCGAATTTACGGCGATGGATGTGA

CircID chr15:89908280|89910819
ORF Type ORF3
Protein Length 65
Nucleotide Length 195
Protein Sequence MLEGELIDVSRHSILDTHGRKERYYVLYIRPSHIHRRKFDAKGNEIEPNFSATRKVNTGFLMSSY
Nucleotide Sequence CTGCTGGAGGGAGAACTGATCGATGTATCTCGGCACAGCATCTTGGACACTCATGGCAGGAAGGAGCGCTACTACGTGCTGTATATCCGGCCCAGTCACATCCATCGCCGTAAATTCGACGCCAAGGGAAATGAAATCGAGCCCAACTTCAGCGCCACCAGGAAGGTGAACACGGGCTTCCTCATGTCGTCCTAC

CircID chr15:89908280|89910819
ORF Type ORF4
Protein Length 48
Nucleotide Length 147
Protein Sequence MYLGTASWTLMAGRSATTCCISGPVTSIAVNSTPREMKSSPTSAPPGR
Nucleotide Sequence ATGTATCTCGGCACAGCATCTTGGACACTCATGGCAGGAAGGAGCGCTACTACGTGCTGTATATCCGGCCCAGTCACATCCATCGCCGTAAATTCGACGCCAAGGGAAATGAAATCGAGCCCAACTTCAGCGCCACCAGGAAGGTGA

RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
chr15:89908280|89910819 NOP56 0 1 0
chr15:89908280|89910819 MOV10 0 1 1
chr15:89908280|89910819 ELAVL1 1 9 1
chr15:89908280|89910819 SF3B4 1 0 0
chr15:89908280|89910819 FMR1 2 0 1
chr15:89908280|89910819 RPS3 2 0 0
chr15:89908280|89910819 TAF15 2 0 0
chr15:89908280|89910819 CAPRIN1 1 0 0
chr15:89908280|89910819 CPSF7 1 0 0
chr15:89908280|89910819 CPSF6 1 0 0
chr15:89908280|89910819 NUDT21 0 1 0
chr15:89908280|89910819 GPKOW 2 0 0
chr15:89908280|89910819 CPSF1 0 1 0
chr15:89908280|89910819 SRSF1 0 0 2
chr15:89908280|89910819 NOP58 0 2 1
chr15:89908280|89910819 SRSF3 1 0 0
chr15:89908280|89910819 U2AF2 4 1 0
chr15:89908280|89910819 HNRNPU 1 0 0
chr15:89908280|89910819 HNRNPK 0 1 0
chr15:89908280|89910819 HNRNPA2B1 0 0 1
chr15:89908280|89910819 SF3A3 1 0 0
chr15:89908280|89910819 FIP1L1 0 1 0
chr15:89908280|89910819 PTBP1 2 4 0
chr15:89908280|89910819 HNRNPC 4 21 0
chr15:89908280|89910819 DDX3X 2 0 0
chr15:89908280|89910819 LIN28B 3 0 0
chr15:89908280|89910819 LIN28A 2 0 0
chr15:89908280|89910819 FXR1 2 0 0
chr15:89908280|89910819 FXR2 2 0 0
chr15:89908280|89910819 UCHL5 3 0 0
chr15:89908280|89910819 TARDBP 1 3 0
chr15:89908280|89910819 YTHDC1 2 0 0
chr15:89908280|89910819 BUD13 0 0 1
chr15:89908280|89910819 PRPF8 0 1 0
chr15:89908280|89910819 RTCB 1 0 0
chr15:89908280|89910819 CSTF2T 1 1 0
chr15:89908280|89910819 CSTF2 5 2 0
chr15:89908280|89910819 DKC1 0 1 0
chr15:89908280|89910819 AGO2 1 0 0
chr15:89908280|89910819 EWSR1 1 0 0
chr15:89908280|89910819 EIF4A3 5 1 4
chr15:89908280|89910819 FBL 0 2 1