CircRNA Information

General Information
circRNA Basic Information
CircID chr15:90217496|90217602
Strand +
CircType exon
Host Gene ENSG00000185033.13;
Algorism CIRI2;
Sequence CTCCTGGTACTCCCCGCCTGGCAGGAAGCTGAGGTTGCTACTGAGTGCAAAGAGGGCCTCTCGAGCACCCACGTACAGGGTCCTGCCATCCCTGCTCAGCAGAAGGG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr15:90217496|90217602 hsa-miR-10a-5p 0 0 1
chr15:90217496|90217602 hsa-miR-10a-3p 0 0 1
chr15:90217496|90217602 hsa-miR-10b-5p 0 0 1
chr15:90217496|90217602 hsa-miR-10b-3p 0 0 1
chr15:90217496|90217602 hsa-miR-504-5p 0 0 1
chr15:90217496|90217602 hsa-miR-504-3p 0 0 1
chr15:90217496|90217602 hsa-miR-507 0 0 1
chr15:90217496|90217602 hsa-miR-557 0 1 1
chr15:90217496|90217602 hsa-miR-665 0 0 1
chr15:90217496|90217602 hsa-miR-936 0 0 1
chr15:90217496|90217602 hsa-miR-1237-5p 0 0 1
chr15:90217496|90217602 hsa-miR-1237-3p 0 0 1
chr15:90217496|90217602 hsa-miR-1286 0 0 1
chr15:90217496|90217602 hsa-miR-486-5p 0 1 1
chr15:90217496|90217602 hsa-miR-199b-3p 0 0 1
chr15:90217496|90217602 hsa-miR-199a-3p 0 0 1
chr15:90217496|90217602 hsa-miR-1207-5p 0 0 1
chr15:90217496|90217602 hsa-miR-516a-3p 0 1 1
chr15:90217496|90217602 hsa-miR-663 0 0 1
chr15:90217496|90217602 hsa-miR-638 1 0 0
chr15:90217496|90217602 hsa-miR-663a 0 1 0
chr15:90217496|90217602 hsa-miR-3907 0 1 0
chr15:90217496|90217602 hsa-miR-3937 0 1 0
chr15:90217496|90217602 hsa-miR-4706 0 1 0
chr15:90217496|90217602 hsa-miR-7703 0 1 0
chr15:90217496|90217602 hsa-miR-222-5p 0 1 0
chr15:90217496|90217602 hsa-miR-93-3p 0 1 0
chr15:90217496|90217602 hsa-miR-6728-5p 1 1 0
chr15:90217496|90217602 hsa-miR-3692-5p 0 1 0
chr15:90217496|90217602 hsa-miR-6089 1 0 0
chr15:90217496|90217602 hsa-miR-6757-5p 0 1 0
chr15:90217496|90217602 hsa-miR-6741-5p 0 1 0
chr15:90217496|90217602 hsa-miR-6787-3p 0 1 0
chr15:90217496|90217602 hsa-miR-2467-5p 0 1 0
chr15:90217496|90217602 hsa-miR-6821-5p 1 1 0
chr15:90217496|90217602 hsa-miR-5008-5p 1 1 0
chr15:90217496|90217602 hsa-miR-5006-5p 0 1 0
chr15:90217496|90217602 hsa-miR-6771-5p 1 0 0
chr15:90217496|90217602 hsa-miR-5088-3p 0 1 0
chr15:90217496|90217602 hsa-miR-328-3p 0 1 0
chr15:90217496|90217602 hsa-miR-4797-3p 0 1 0
chr15:90217496|90217602 hsa-miR-4763-3p 1 1 0
chr15:90217496|90217602 hsa-miR-6808-5p 1 0 0
chr15:90217496|90217602 hsa-miR-6836-5p 0 1 0
chr15:90217496|90217602 hsa-miR-1909-3p 1 0 0
chr15:90217496|90217602 hsa-miR-328-5p 1 0 0
chr15:90217496|90217602 hsa-miR-4749-5p 0 1 0
chr15:90217496|90217602 hsa-miR-6777-5p 0 1 0
chr15:90217496|90217602 hsa-miR-6889-5p 0 1 0
chr15:90217496|90217602 hsa-miR-3184-5p 1 0 0
chr15:90217496|90217602 hsa-miR-4756-5p 1 0 0
chr15:90217496|90217602 hsa-miR-516b-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr15:90217496|90217602
ORF Type ORF1
Protein Length 34
Nucleotide Length 102
Protein Sequence MVLPAWQEAEVATECKEGLSSTHVQGPAIPAQQK
Nucleotide Sequence CTGGTACTCCCCGCCTGGCAGGAAGCTGAGGTTGCTACTGAGTGCAAAGAGGGCCTCTCGAGCACCCACGTACAGGGTCCTGCCATCCCTGCTCAGCAGAAG
CircID chr15:90217496|90217602
ORF Type ORF2
Protein Length 26
Nucleotide Length 78
Protein Sequence MRLLLSAKRASRAPTYRVLPSLLSRR
Nucleotide Sequence CTGAGGTTGCTACTGAGTGCAAAGAGGGCCTCTCGAGCACCCACGTACAGGGTCCTGCCATCCCTGCTCAGCAGAAGG
CircID chr15:90217496|90217602
ORF Type ORF3
Protein Length 29
Nucleotide Length 87
Protein Sequence MAGPCTWVLERPSLHSVATSASCQAGSTR
Nucleotide Sequence ATGGCAGGACCCTGTACGTGGGTGCTCGAGAGGCCCTCTTTGCACTCAGTAGCAACCTCAGCTTCCTGCCAGGCGGGGAGTACCAGG
CircID chr15:90217496|90217602
ORF Type ORF4
Protein Length 34
Nucleotide Length 102
Protein Sequence MLSRDGRTLYVGAREALFALSSNLSFLPGGEYQE
Nucleotide Sequence CTGCTGAGCAGGGATGGCAGGACCCTGTACGTGGGTGCTCGAGAGGCCCTCTTTGCACTCAGTAGCAACCTCAGCTTCCTGCCAGGCGGGGAGTACCAGGAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab