CircRNA Information

General Information
circRNA Basic Information
CircID chr15:90493615|90493753
Strand -
CircType exon
Host Gene
Algorism CIRI2;
Sequence CTAGATTCACCCATTTTTAATATTTTGCCATATCTGCTTCCCATTTCCCTGGCTCTTGCATGTCCTCTGTTTCTCTCTTTCCATGGAAGACTCTCTGGGGTCAGGCATGGGTGATGGAAGGGATGAAAAACAGGCCCAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr15:90493615|90493753 hsa-miR-183-5p 0 0 1
chr15:90493615|90493753 hsa-miR-183-3p 0 0 1
chr15:90493615|90493753 hsa-miR-335-5p 0 0 1
chr15:90493615|90493753 hsa-miR-335-3p 0 0 1
chr15:90493615|90493753 hsa-miR-924 0 0 1
chr15:90493615|90493753 hsa-miR-1262 0 1 1
chr15:90493615|90493753 hsa-miR-188-5p 0 1 1
chr15:90493615|90493753 hsa-miR-548c-3p 0 0 1
chr15:90493615|90493753 hsa-miR-1201 0 0 1
chr15:90493615|90493753 hsa-miR-920 1 0 0
chr15:90493615|90493753 hsa-miR-3138 1 0 0
chr15:90493615|90493753 hsa-miR-4270 1 0 0
chr15:90493615|90493753 hsa-miR-4506 0 1 0
chr15:90493615|90493753 hsa-miR-3978 1 0 0
chr15:90493615|90493753 hsa-miR-4644 1 1 0
chr15:90493615|90493753 hsa-miR-4739 1 0 0
chr15:90493615|90493753 hsa-miR-5739 1 0 0
chr15:90493615|90493753 hsa-miR-8085 1 0 0
chr15:90493615|90493753 hsa-miR-8089 1 0 0
chr15:90493615|90493753 hsa-miR-1236-5p 1 0 0
chr15:90493615|90493753 hsa-miR-6807-5p 1 1 0
chr15:90493615|90493753 hsa-miR-6873-5p 1 1 0
chr15:90493615|90493753 hsa-miR-4695-5p 1 0 0
chr15:90493615|90493753 hsa-miR-6746-5p 1 0 0
chr15:90493615|90493753 hsa-miR-4655-5p 1 0 0
chr15:90493615|90493753 hsa-miR-197-5p 1 0 0
chr15:90493615|90493753 hsa-miR-6760-5p 1 1 0
chr15:90493615|90493753 hsa-miR-2467-3p 1 0 0
chr15:90493615|90493753 hsa-miR-30b-3p 1 0 0
chr15:90493615|90493753 hsa-miR-5006-5p 1 0 0
chr15:90493615|90493753 hsa-miR-6735-3p 0 1 0
chr15:90493615|90493753 hsa-miR-6884-3p 0 1 0
chr15:90493615|90493753 hsa-miR-1226-5p 1 0 0
chr15:90493615|90493753 hsa-miR-4640-5p 1 0 0
chr15:90493615|90493753 hsa-miR-877-5p 1 0 0
chr15:90493615|90493753 hsa-miR-6847-5p 1 1 0
chr15:90493615|90493753 hsa-miR-5584-5p 1 1 0
chr15:90493615|90493753 hsa-miR-4727-3p 1 0 0
chr15:90493615|90493753 hsa-miR-6872-3p 0 1 0
chr15:90493615|90493753 hsa-miR-5004-5p 0 1 0
chr15:90493615|90493753 hsa-miR-204-5p 0 1 0
chr15:90493615|90493753 hsa-miR-5581-3p 0 1 0
chr15:90493615|90493753 hsa-miR-627-5p 0 1 0
chr15:90493615|90493753 hsa-miR-1207-5p 1 0 0
chr15:90493615|90493753 hsa-miR-1343-5p 1 0 0
chr15:90493615|90493753 hsa-miR-6726-5p 1 0 0
chr15:90493615|90493753 hsa-miR-6743-5p 1 0 0
chr15:90493615|90493753 hsa-miR-6808-5p 1 0 0
chr15:90493615|90493753 hsa-miR-5196-5p 1 0 0
chr15:90493615|90493753 hsa-miR-4649-5p 1 0 0
chr15:90493615|90493753 hsa-miR-4685-5p 1 0 0
chr15:90493615|90493753 hsa-miR-4726-5p 1 0 0
chr15:90493615|90493753 hsa-miR-939-5p 1 0 0
chr15:90493615|90493753 hsa-miR-6758-5p 1 0 0
chr15:90493615|90493753 hsa-miR-6856-5p 1 1 0
chr15:90493615|90493753 hsa-miR-3679-5p 1 1 0
chr15:90493615|90493753 hsa-miR-4646-5p 1 0 0
chr15:90493615|90493753 hsa-miR-4747-5p 1 0 0
chr15:90493615|90493753 hsa-miR-4667-5p 1 0 0
chr15:90493615|90493753 hsa-miR-7107-3p 0 1 0
chr15:90493615|90493753 hsa-miR-5581-5p 1 0 0
chr15:90493615|90493753 hsa-miR-6859-5p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr15:90493615|90493753
ORF Type ORF1
Protein Length 29
Nucleotide Length 90
Protein Sequence MPYLLPISLALACPLFLSFHGRLSGVRHG
Nucleotide Sequence TTGCCATATCTGCTTCCCATTTCCCTGGCTCTTGCATGTCCTCTGTTTCTCTCTTTCCATGGAAGACTCTCTGGGGTCAGGCATGGGTGA
CircID chr15:90493615|90493753
ORF Type ORF2
Protein Length 28
Nucleotide Length 84
Protein Sequence MHVLCFSLSMEDSLGSGMGDGRDEKQAH
Nucleotide Sequence TTGCATGTCCTCTGTTTCTCTCTTTCCATGGAAGACTCTCTGGGGTCAGGCATGGGTGATGGAAGGGATGAAAAACAGGCCCAC
CircID chr15:90493615|90493753
ORF Type ORF3
Protein Length 26
Nucleotide Length 78
Protein Sequence MSSVSLFPWKTLWGQAWVMEGMKNRP
Nucleotide Sequence ATGTCCTCTGTTTCTCTCTTTCCATGGAAGACTCTCTGGGGTCAGGCATGGGTGATGGAAGGGATGAAAAACAGGCCC
CircID chr15:90493615|90493753
ORF Type ORF4
Protein Length 33
Nucleotide Length 102
Protein Sequence MPDPRESSMEREKQRTCKSQGNGKQIWQNIKNG
Nucleotide Sequence ATGCCTGACCCCAGAGAGTCTTCCATGGAAAGAGAGAAACAGAGGACATGCAAGAGCCAGGGAAATGGGAAGCAGATATGGCAAAATATTAAAAATGGGTGA
CircID chr15:90493615|90493753
ORF Type ORF5
Protein Length 34
Nucleotide Length 102
Protein Sequence MTPESLPWKERNRGHARAREMGSRYGKILKMGES
Nucleotide Sequence CTGACCCCAGAGAGTCTTCCATGGAAAGAGAGAAACAGAGGACATGCAAGAGCCAGGGAAATGGGAAGCAGATATGGCAAAATATTAAAAATGGGTGAATCT
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab