CircRNA Information

General Information
circRNA Basic Information
CircID chr15:90931849|90932084
Strand -
CircType exon
Host Gene ENSG00000184508.9;
Algorism CIRI2;
Sequence CTCCTCCACCAGGCGCCGCACTTGTGCCCCAAAGTGTAGCTCCACCTCATCCAGGGTGGTGTCTGTGTCCTCCACCGTGTCATGGAGCAGGGCCGCCTGGGGACAAGTTCCCACTCAGCCCTGAGATGTCAGCCAAGGGTTGCCCATTGCTGAATGGGGCCCCTAATCCCCATCCCAGGCTCCTGGCAGAGAAGGGGGAAAGTTACCTGTAACACCACAATGTCAGTGATTCCCGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr15:90931849|90932084 hsa-miR-34b-5p 0 0 1
chr15:90931849|90932084 hsa-miR-34b-3p 0 0 1
chr15:90931849|90932084 hsa-miR-425-5p 0 0 1
chr15:90931849|90932084 hsa-miR-425-3p 0 0 1
chr15:90931849|90932084 hsa-miR-489-5p 0 0 1
chr15:90931849|90932084 hsa-miR-489-3p 0 0 1
chr15:90931849|90932084 hsa-miR-545-5p 0 0 1
chr15:90931849|90932084 hsa-miR-545-3p 0 0 1
chr15:90931849|90932084 hsa-miR-552-5p 0 0 1
chr15:90931849|90932084 hsa-miR-552-3p 0 0 1
chr15:90931849|90932084 hsa-miR-647 0 0 1
chr15:90931849|90932084 hsa-miR-661 0 0 1
chr15:90931849|90932084 hsa-miR-765 0 0 1
chr15:90931849|90932084 hsa-miR-665 1 1 1
chr15:90931849|90932084 hsa-miR-942-5p 0 0 1
chr15:90931849|90932084 hsa-miR-942-3p 0 0 1
chr15:90931849|90932084 hsa-miR-1291 0 0 1
chr15:90931849|90932084 hsa-miR-1255a 0 0 1
chr15:90931849|90932084 hsa-miR-1266-5p 0 0 1
chr15:90931849|90932084 hsa-miR-1266-3p 0 0 1
chr15:90931849|90932084 hsa-miR-1292-5p 0 0 1
chr15:90931849|90932084 hsa-miR-1292-3p 0 0 1
chr15:90931849|90932084 hsa-miR-1197 0 1 1
chr15:90931849|90932084 hsa-miR-296-5p 0 0 1
chr15:90931849|90932084 hsa-miR-486-3p 0 0 1
chr15:90931849|90932084 hsa-miR-566 0 0 1
chr15:90931849|90932084 hsa-miR-220b 0 0 1
chr15:90931849|90932084 hsa-miR-1255b 0 0 1
chr15:90931849|90932084 hsa-miR-608 1 0 0
chr15:90931849|90932084 hsa-miR-637 1 0 0
chr15:90931849|90932084 hsa-miR-762 1 0 0
chr15:90931849|90932084 hsa-miR-3937 0 1 0
chr15:90931849|90932084 hsa-miR-1268b 1 0 0
chr15:90931849|90932084 hsa-miR-4462 0 1 0
chr15:90931849|90932084 hsa-miR-4466 1 0 0
chr15:90931849|90932084 hsa-miR-2392 0 1 0
chr15:90931849|90932084 hsa-miR-4518 1 1 0
chr15:90931849|90932084 hsa-miR-3972 1 0 0
chr15:90931849|90932084 hsa-miR-4642 1 0 0
chr15:90931849|90932084 hsa-miR-4656 1 1 0
chr15:90931849|90932084 hsa-miR-8077 1 1 0
chr15:90931849|90932084 hsa-miR-125b-2-3p 0 1 0
chr15:90931849|90932084 hsa-miR-4433a-3p 1 0 0
chr15:90931849|90932084 hsa-miR-212-5p 0 1 0
chr15:90931849|90932084 hsa-miR-6857-5p 0 1 0
chr15:90931849|90932084 hsa-miR-6728-5p 1 1 0
chr15:90931849|90932084 hsa-miR-6880-5p 1 1 0
chr15:90931849|90932084 hsa-miR-7847-3p 1 1 0
chr15:90931849|90932084 hsa-miR-874-5p 0 1 0
chr15:90931849|90932084 hsa-miR-6727-5p 1 0 0
chr15:90931849|90932084 hsa-miR-3189-5p 0 1 0
chr15:90931849|90932084 hsa-miR-6782-5p 1 0 0
chr15:90931849|90932084 hsa-miR-5006-5p 1 1 0
chr15:90931849|90932084 hsa-miR-1226-5p 1 0 0
chr15:90931849|90932084 hsa-miR-6757-3p 1 0 0
chr15:90931849|90932084 hsa-miR-3127-5p 0 1 0
chr15:90931849|90932084 hsa-miR-296-3p 1 1 0
chr15:90931849|90932084 hsa-miR-6749-5p 1 0 0
chr15:90931849|90932084 hsa-miR-4446-3p 0 1 0
chr15:90931849|90932084 hsa-miR-6825-3p 1 0 0
chr15:90931849|90932084 hsa-miR-6730-3p 1 0 0
chr15:90931849|90932084 hsa-miR-5088-3p 0 1 0
chr15:90931849|90932084 hsa-miR-4763-3p 1 0 0
chr15:90931849|90932084 hsa-miR-6812-5p 1 0 0
chr15:90931849|90932084 hsa-miR-6737-5p 1 0 0
chr15:90931849|90932084 hsa-miR-6756-5p 1 0 0
chr15:90931849|90932084 hsa-miR-6803-5p 1 0 0
chr15:90931849|90932084 hsa-miR-7107-5p 1 0 0
chr15:90931849|90932084 hsa-miR-3127-3p 0 1 0
chr15:90931849|90932084 hsa-miR-320a-5p 0 1 0
chr15:90931849|90932084 hsa-miR-3620-5p 1 0 0
chr15:90931849|90932084 hsa-miR-5196-5p 1 0 0
chr15:90931849|90932084 hsa-miR-4685-5p 1 1 0
chr15:90931849|90932084 hsa-miR-4745-5p 1 1 0
chr15:90931849|90932084 hsa-miR-6795-5p 1 0 0
chr15:90931849|90932084 hsa-miR-6846-5p 1 0 0
chr15:90931849|90932084 hsa-miR-6848-5p 1 0 0
chr15:90931849|90932084 hsa-miR-3187-5p 0 1 0
chr15:90931849|90932084 hsa-miR-1238-5p 1 1 0
chr15:90931849|90932084 hsa-miR-4758-5p 1 1 0
chr15:90931849|90932084 hsa-miR-3940-5p 1 0 0
chr15:90931849|90932084 hsa-miR-6799-3p 0 1 0
chr15:90931849|90932084 hsa-miR-541-3p 1 0 0
chr15:90931849|90932084 hsa-miR-6785-5p 1 0 0
chr15:90931849|90932084 hsa-miR-5591-5p 0 1 0
chr15:90931849|90932084 hsa-miR-6756-3p 0 1 0
chr15:90931849|90932084 hsa-miR-6775-3p 0 1 0
chr15:90931849|90932084 hsa-miR-6817-5p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr15:90931849|90932084
ORF Type ORF1
Protein Length 27
Nucleotide Length 81
Protein Sequence MGPLIPIPGSWQRRGKVTCNTTMSVIP
Nucleotide Sequence ATGGGGCCCCTAATCCCCATCCCAGGCTCCTGGCAGAGAAGGGGGAAAGTTACCTGTAACACCACAATGTCAGTGATTCCC
CircID chr15:90931849|90932084
ORF Type ORF2
Protein Length 49
Nucleotide Length 150
Protein Sequence MCPPPCHGAGPPGDKFPLSPEMSAKGCPLLNGAPNPHPRLLAEKGESYL
Nucleotide Sequence CTGTGTCCTCCACCGTGTCATGGAGCAGGGCCGCCTGGGGACAAGTTCCCACTCAGCCCTGAGATGTCAGCCAAGGGTTGCCCATTGCTGAATGGGGCCCCTAATCCCCATCCCAGGCTCCTGGCAGAGAAGGGGGAAAGTTACCTGTAA
CircID chr15:90931849|90932084
ORF Type ORF3
Protein Length 27
Nucleotide Length 81
Protein Sequence MTRWRTQTPPWMRWSYTLGHKCGAWWR
Nucleotide Sequence ATGACACGGTGGAGGACACAGACACCACCCTGGATGAGGTGGAGCTACACTTTGGGGCACAAGTGCGGCGCCTGGTGGAGG
CircID chr15:90931849|90932084
ORF Type ORF4
Protein Length 32
Nucleotide Length 99
Protein Sequence MGWGLGAPFSNGQPLADISGLSGNLSPGGPAP
Nucleotide Sequence CTGGGATGGGGATTAGGGGCCCCATTCAGCAATGGGCAACCCTTGGCTGACATCTCAGGGCTGAGTGGGAACTTGTCCCCAGGCGGCCCTGCTCCATGA
CircID chr15:90931849|90932084
ORF Type ORF5
Protein Length 30
Nucleotide Length 90
Protein Sequence MLHDTVEDTDTTLDEVELHFGAQVRRLVEE
Nucleotide Sequence CTGCTCCATGACACGGTGGAGGACACAGACACCACCCTGGATGAGGTGGAGCTACACTTTGGGGCACAAGTGCGGCGCCTGGTGGAGGAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab