CircRNA Information

General Information
circRNA Basic Information
CircID chr15:93025564|93025734
Strand +
CircType exon
Host Gene ENSG00000173575.17;
Algorism CIRI2;
Sequence ATTAGAAGCCTGTTCACTGCCTGCACCAGGACCCCCACCTTTGTGATTGCAACAAGTTGGTCAGCAGGCCTGCCTCTGCATCCCCTTCTCCAGGTCCTGTAGCTTTCCTTCTCACCACAGGAATCAGAAATCCACCAGGGATTCCAGTTCCCTGGCCACACTACTCCCCAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr15:93025564|93025734 hsa-miR-34a-5p 0 0 1
chr15:93025564|93025734 hsa-miR-34a-3p 0 0 1
chr15:93025564|93025734 hsa-miR-370-5p 0 0 1
chr15:93025564|93025734 hsa-miR-370-3p 0 0 1
chr15:93025564|93025734 hsa-miR-449a 0 0 1
chr15:93025564|93025734 hsa-miR-492 0 1 1
chr15:93025564|93025734 hsa-miR-619-5p 0 0 1
chr15:93025564|93025734 hsa-miR-619-3p 0 0 1
chr15:93025564|93025734 hsa-miR-631 0 0 1
chr15:93025564|93025734 hsa-miR-648 0 0 1
chr15:93025564|93025734 hsa-miR-449b-5p 0 0 1
chr15:93025564|93025734 hsa-miR-449b-3p 0 0 1
chr15:93025564|93025734 hsa-miR-939-5p 0 0 1
chr15:93025564|93025734 hsa-miR-939-3p 0 0 1
chr15:93025564|93025734 hsa-miR-940 0 0 1
chr15:93025564|93025734 hsa-miR-663b 0 0 1
chr15:93025564|93025734 hsa-miR-1290 0 0 1
chr15:93025564|93025734 hsa-miR-1253 0 0 1
chr15:93025564|93025734 hsa-miR-1252-5p 0 0 1
chr15:93025564|93025734 hsa-miR-1252-3p 0 0 1
chr15:93025564|93025734 hsa-miR-1827 0 0 1
chr15:93025564|93025734 hsa-miR-491-5p 0 0 1
chr15:93025564|93025734 hsa-miR-615-5p 1 1 1
chr15:93025564|93025734 hsa-miR-628-5p 0 0 1
chr15:93025564|93025734 hsa-miR-576-5p 0 0 1
chr15:93025564|93025734 hsa-miR-34c-5p 0 1 1
chr15:93025564|93025734 hsa-miR-876-5p 0 0 1
chr15:93025564|93025734 hsa-miR-142-3p 0 0 1
chr15:93025564|93025734 hsa-miR-644 0 0 1
chr15:93025564|93025734 hsa-miR-1300 0 0 1
chr15:93025564|93025734 hsa-miR-1182 1 0 0
chr15:93025564|93025734 hsa-miR-1268a 1 0 0
chr15:93025564|93025734 hsa-miR-548q 0 1 0
chr15:93025564|93025734 hsa-miR-2861 1 0 0
chr15:93025564|93025734 hsa-miR-3154 1 1 0
chr15:93025564|93025734 hsa-miR-3185 1 0 0
chr15:93025564|93025734 hsa-miR-3936 1 0 0
chr15:93025564|93025734 hsa-miR-1268b 1 0 0
chr15:93025564|93025734 hsa-miR-4447 0 1 0
chr15:93025564|93025734 hsa-miR-4456 0 1 0
chr15:93025564|93025734 hsa-miR-4466 1 0 0
chr15:93025564|93025734 hsa-miR-4514 0 1 0
chr15:93025564|93025734 hsa-miR-4516 1 1 0
chr15:93025564|93025734 hsa-miR-4533 1 1 0
chr15:93025564|93025734 hsa-miR-4692 1 1 0
chr15:93025564|93025734 hsa-miR-4710 1 0 0
chr15:93025564|93025734 hsa-miR-4734 1 0 0
chr15:93025564|93025734 hsa-miR-6081 1 0 0
chr15:93025564|93025734 hsa-miR-8089 1 1 0
chr15:93025564|93025734 hsa-miR-9718 0 1 0
chr15:93025564|93025734 hsa-miR-12120 1 0 0
chr15:93025564|93025734 hsa-miR-92a-2-5p 0 1 0
chr15:93025564|93025734 hsa-miR-504-3p 1 0 0
chr15:93025564|93025734 hsa-miR-671-5p 1 0 0
chr15:93025564|93025734 hsa-miR-7106-5p 1 0 0
chr15:93025564|93025734 hsa-miR-6825-5p 1 0 0
chr15:93025564|93025734 hsa-miR-6894-5p 1 0 0
chr15:93025564|93025734 hsa-miR-6857-5p 1 0 0
chr15:93025564|93025734 hsa-miR-6880-5p 1 0 0
chr15:93025564|93025734 hsa-miR-7847-3p 1 0 0
chr15:93025564|93025734 hsa-miR-6746-5p 1 0 0
chr15:93025564|93025734 hsa-miR-7108-5p 0 1 0
chr15:93025564|93025734 hsa-miR-6772-5p 1 0 0
chr15:93025564|93025734 hsa-miR-6793-5p 1 0 0
chr15:93025564|93025734 hsa-miR-6732-5p 1 0 0
chr15:93025564|93025734 hsa-miR-23a-5p 1 0 0
chr15:93025564|93025734 hsa-miR-6798-5p 1 0 0
chr15:93025564|93025734 hsa-miR-6770-5p 0 1 0
chr15:93025564|93025734 hsa-miR-2467-3p 0 1 0
chr15:93025564|93025734 hsa-miR-7855-5p 0 1 0
chr15:93025564|93025734 hsa-miR-4738-3p 1 0 0
chr15:93025564|93025734 hsa-miR-4640-5p 1 0 0
chr15:93025564|93025734 hsa-miR-6749-5p 1 0 0
chr15:93025564|93025734 hsa-miR-4787-5p 1 0 0
chr15:93025564|93025734 hsa-miR-193a-5p 1 0 0
chr15:93025564|93025734 hsa-miR-3162-5p 1 0 0
chr15:93025564|93025734 hsa-miR-6802-5p 1 0 0
chr15:93025564|93025734 hsa-miR-7156-3p 1 0 0
chr15:93025564|93025734 hsa-miR-4763-3p 1 0 0
chr15:93025564|93025734 hsa-miR-6769b-5p 1 0 0
chr15:93025564|93025734 hsa-miR-6812-5p 1 0 0
chr15:93025564|93025734 hsa-miR-1343-5p 1 0 0
chr15:93025564|93025734 hsa-miR-6726-5p 1 0 0
chr15:93025564|93025734 hsa-miR-6752-5p 1 1 0
chr15:93025564|93025734 hsa-miR-6756-5p 1 0 0
chr15:93025564|93025734 hsa-miR-6803-5p 1 1 0
chr15:93025564|93025734 hsa-miR-7107-5p 1 0 0
chr15:93025564|93025734 hsa-miR-11181-3p 1 0 0
chr15:93025564|93025734 hsa-miR-6751-5p 1 0 0
chr15:93025564|93025734 hsa-miR-6763-5p 1 1 0
chr15:93025564|93025734 hsa-miR-6808-5p 1 1 0
chr15:93025564|93025734 hsa-miR-7111-5p 1 0 0
chr15:93025564|93025734 hsa-miR-5196-5p 1 0 0
chr15:93025564|93025734 hsa-miR-6780b-5p 1 0 0
chr15:93025564|93025734 hsa-miR-1909-3p 1 1 0
chr15:93025564|93025734 hsa-miR-328-5p 1 0 0
chr15:93025564|93025734 hsa-miR-449c-5p 0 1 0
chr15:93025564|93025734 hsa-miR-4745-5p 1 0 0
chr15:93025564|93025734 hsa-miR-6777-5p 1 0 0
chr15:93025564|93025734 hsa-miR-6858-5p 1 0 0
chr15:93025564|93025734 hsa-miR-6889-5p 1 0 0
chr15:93025564|93025734 hsa-miR-4769-5p 1 0 0
chr15:93025564|93025734 hsa-miR-6511b-5p 0 1 0
chr15:93025564|93025734 hsa-miR-3173-3p 1 0 0
chr15:93025564|93025734 hsa-miR-378a-3p 1 0 0
chr15:93025564|93025734 hsa-miR-4472 0 1 0
chr15:93025564|93025734 hsa-miR-6791-5p 1 0 0
chr15:93025564|93025734 hsa-miR-10394-5p 1 1 0
chr15:93025564|93025734 hsa-miR-2682-5p 0 1 0
chr15:93025564|93025734 hsa-miR-6811-5p 1 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr15:93025564|93025734
ORF Type ORF1
Protein Length 30
Nucleotide Length 93
Protein Sequence MFTACTRTPTFVIATSWSAGLPLHPLLQVL
Nucleotide Sequence CTGTTCACTGCCTGCACCAGGACCCCCACCTTTGTGATTGCAACAAGTTGGTCAGCAGGCCTGCCTCTGCATCCCCTTCTCCAGGTCCTGTAG
CircID chr15:93025564|93025734
ORF Type ORF2
Protein Length 41
Nucleotide Length 123
Protein Sequence MQQVGQQACLCIPFSRSCSFPSHHRNQKSTRDSSSLATLLP
Nucleotide Sequence TTGCAACAAGTTGGTCAGCAGGCCTGCCTCTGCATCCCCTTCTCCAGGTCCTGTAGCTTTCCTTCTCACCACAGGAATCAGAAATCCACCAGGGATTCCAGTTCCCTGGCCACACTACTCCCC
CircID chr15:93025564|93025734
ORF Type ORF3
Protein Length 50
Nucleotide Length 150
Protein Sequence MHQDPHLCDCNKLVSRPASASPSPGPVAFLLTTGIRNPPGIPVPWPHYSP
Nucleotide Sequence CTGCACCAGGACCCCCACCTTTGTGATTGCAACAAGTTGGTCAGCAGGCCTGCCTCTGCATCCCCTTCTCCAGGTCCTGTAGCTTTCCTTCTCACCACAGGAATCAGAAATCCACCAGGGATTCCAGTTCCCTGGCCACACTACTCCCCA
CircID chr15:93025564|93025734
ORF Type ORF4
Protein Length 37
Nucleotide Length 114
Protein Sequence MIPVVRRKATGPGEGDAEAGLLTNLLQSQRWGSWCRQ
Nucleotide Sequence CTGATTCCTGTGGTGAGAAGGAAAGCTACAGGACCTGGAGAAGGGGATGCAGAGGCAGGCCTGCTGACCAACTTGTTGCAATCACAAAGGTGGGGGTCCTGGTGCAGGCAGTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab