CircRNA Information

General Information
circRNA Basic Information
CircID chr15:98916722|98922169
Strand +
CircType exon
Host Gene ENSG00000140443.12;
Algorism CIRI2;
Sequence ATCTCTCCGCTTCCTTTCAGGTCTGGGCACGAAGATGGAGTTGTGCAGGAAATTCTCAAAGACTTTGCGGTATTCAGCCTCCTCCTTCTCGGCCTGCTTCTCGGCTTCAGTTTTGGGGCAGGCGCAGCAAGGCCCTTTCTCCCCACCACACACCTCAGTCTTGGGGTTCTCTGTGAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr15:98916722|98922169 hsa-miR-185-5p 0 0 1
chr15:98916722|98922169 hsa-miR-185-3p 0 0 1
chr15:98916722|98922169 hsa-miR-488-5p 0 0 1
chr15:98916722|98922169 hsa-miR-488-3p 0 0 1
chr15:98916722|98922169 hsa-miR-517-5p 0 0 1
chr15:98916722|98922169 hsa-miR-517a-3p 0 0 1
chr15:98916722|98922169 hsa-miR-517c-3p 0 0 1
chr15:98916722|98922169 hsa-miR-580-5p 0 0 1
chr15:98916722|98922169 hsa-miR-580-3p 0 0 1
chr15:98916722|98922169 hsa-miR-589-5p 0 0 1
chr15:98916722|98922169 hsa-miR-589-3p 0 0 1
chr15:98916722|98922169 hsa-miR-1264 0 0 1
chr15:98916722|98922169 hsa-miR-1323 0 1 1
chr15:98916722|98922169 hsa-miR-765 0 0 1
chr15:98916722|98922169 hsa-miR-541-5p 0 0 1
chr15:98916722|98922169 hsa-miR-541-3p 0 0 1
chr15:98916722|98922169 hsa-miR-939-5p 0 0 1
chr15:98916722|98922169 hsa-miR-939-3p 0 0 1
chr15:98916722|98922169 hsa-miR-548e-5p 0 0 1
chr15:98916722|98922169 hsa-miR-548e-3p 0 0 1
chr15:98916722|98922169 hsa-miR-548o-3p 0 0 1
chr15:98916722|98922169 hsa-miR-548o 0 0 1
chr15:98916722|98922169 hsa-miR-491-5p 0 0 1
chr15:98916722|98922169 hsa-miR-485-5p 0 0 1
chr15:98916722|98922169 hsa-miR-654-5p 0 0 1
chr15:98916722|98922169 hsa-miR-324-3p 0 0 1
chr15:98916722|98922169 hsa-miR-548a-3p 0 0 1
chr15:98916722|98922169 hsa-miR-644 0 0 1
chr15:98916722|98922169 hsa-miR-548f 0 0 1
chr15:98916722|98922169 hsa-miR-1300 0 0 1
chr15:98916722|98922169 hsa-miR-147 0 0 1
chr15:98916722|98922169 hsa-miR-611 1 0 0
chr15:98916722|98922169 hsa-miR-3131 1 0 0
chr15:98916722|98922169 hsa-miR-3175 0 1 0
chr15:98916722|98922169 hsa-miR-3661 1 0 0
chr15:98916722|98922169 hsa-miR-3919 0 1 0
chr15:98916722|98922169 hsa-miR-4429 0 1 0
chr15:98916722|98922169 hsa-miR-4440 1 0 0
chr15:98916722|98922169 hsa-miR-4463 1 0 0
chr15:98916722|98922169 hsa-miR-4499 1 0 0
chr15:98916722|98922169 hsa-miR-4510 0 1 0
chr15:98916722|98922169 hsa-miR-4512 0 1 0
chr15:98916722|98922169 hsa-miR-4513 1 0 0
chr15:98916722|98922169 hsa-miR-4533 1 0 0
chr15:98916722|98922169 hsa-miR-4651 1 0 0
chr15:98916722|98922169 hsa-miR-4656 0 1 0
chr15:98916722|98922169 hsa-miR-4706 1 0 0
chr15:98916722|98922169 hsa-miR-4739 1 0 0
chr15:98916722|98922169 hsa-miR-6133 1 1 0
chr15:98916722|98922169 hsa-miR-12115 1 0 0
chr15:98916722|98922169 hsa-miR-12118 0 1 0
chr15:98916722|98922169 hsa-miR-12122 0 1 0
chr15:98916722|98922169 hsa-miR-92a-2-5p 1 0 0
chr15:98916722|98922169 hsa-miR-6747-5p 1 0 0
chr15:98916722|98922169 hsa-miR-4433a-3p 1 0 0
chr15:98916722|98922169 hsa-miR-7106-5p 0 1 0
chr15:98916722|98922169 hsa-miR-6089 1 1 0
chr15:98916722|98922169 hsa-miR-6867-5p 1 1 0
chr15:98916722|98922169 hsa-miR-7160-5p 1 0 0
chr15:98916722|98922169 hsa-miR-3189-5p 1 0 0
chr15:98916722|98922169 hsa-miR-3156-5p 1 0 0
chr15:98916722|98922169 hsa-miR-6821-5p 1 0 0
chr15:98916722|98922169 hsa-miR-6786-5p 1 0 0
chr15:98916722|98922169 hsa-miR-4707-3p 1 0 0
chr15:98916722|98922169 hsa-miR-4690-5p 0 1 0
chr15:98916722|98922169 hsa-miR-3925-5p 0 1 0
chr15:98916722|98922169 hsa-miR-6878-5p 0 1 0
chr15:98916722|98922169 hsa-miR-6877-5p 0 1 0
chr15:98916722|98922169 hsa-miR-6720-3p 0 1 0
chr15:98916722|98922169 hsa-miR-6814-5p 1 0 0
chr15:98916722|98922169 hsa-miR-3074-5p 0 1 0
chr15:98916722|98922169 hsa-miR-4649-3p 1 0 0
chr15:98916722|98922169 hsa-miR-1911-5p 1 1 0
chr15:98916722|98922169 hsa-miR-5699-5p 0 1 0
chr15:98916722|98922169 hsa-miR-6769b-5p 1 0 0
chr15:98916722|98922169 hsa-miR-6812-5p 1 1 0
chr15:98916722|98922169 hsa-miR-6737-5p 1 0 0
chr15:98916722|98922169 hsa-miR-6752-5p 1 0 0
chr15:98916722|98922169 hsa-miR-6756-5p 1 0 0
chr15:98916722|98922169 hsa-miR-6769a-5p 1 0 0
chr15:98916722|98922169 hsa-miR-6819-5p 1 0 0
chr15:98916722|98922169 hsa-miR-7110-5p 1 0 0
chr15:98916722|98922169 hsa-miR-11181-3p 1 0 0
chr15:98916722|98922169 hsa-miR-6763-5p 1 0 0
chr15:98916722|98922169 hsa-miR-6797-5p 0 1 0
chr15:98916722|98922169 hsa-miR-675-5p 1 0 0
chr15:98916722|98922169 hsa-miR-6846-5p 1 1 0
chr15:98916722|98922169 hsa-miR-6858-5p 1 0 0
chr15:98916722|98922169 hsa-miR-6511b-5p 0 1 0
chr15:98916722|98922169 hsa-miR-6891-5p 0 1 0
chr15:98916722|98922169 hsa-miR-6884-5p 0 1 0
chr15:98916722|98922169 hsa-miR-195-3p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr15:98916722|98922169
ORF Type ORF1
Protein Length 28
Nucleotide Length 84
Protein Sequence MLLGFSFGAGAARPFLPTTHLSLGVLCD
Nucleotide Sequence CTGCTTCTCGGCTTCAGTTTTGGGGCAGGCGCAGCAAGGCCCTTTCTCCCCACCACACACCTCAGTCTTGGGGTTCTCTGTGAC
CircID chr15:98916722|98922169
ORF Type ORF2
Protein Length 51
Nucleotide Length 153
Protein Sequence MGTKMELCRKFSKTLRYSASSFSACFSASVLGQAQQGPFSPPHTSVLGFSV
Nucleotide Sequence CTGGGCACGAAGATGGAGTTGTGCAGGAAATTCTCAAAGACTTTGCGGTATTCAGCCTCCTCCTTCTCGGCCTGCTTCTCGGCTTCAGTTTTGGGGCAGGCGCAGCAAGGCCCTTTCTCCCCACCACACACCTCAGTCTTGGGGTTCTCTGTG
CircID chr15:98916722|98922169
ORF Type ORF3
Protein Length 52
Nucleotide Length 156
Protein Sequence MRCVVGRKGLAAPAPKLKPRSRPRRRRLNTAKSLRISCTTPSSCPDLKGSGE
Nucleotide Sequence CTGAGGTGTGTGGTGGGGAGAAAGGGCCTTGCTGCGCCTGCCCCAAAACTGAAGCCGAGAAGCAGGCCGAGAAGGAGGAGGCTGAATACCGCAAAGTCTTTGAGAATTTCCTGCACAACTCCATCTTCGTGCCCAGACCTGAAAGGAAGCGGAGAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab