CircRNA Information

General Information
circRNA Basic Information
CircID chr15:98957729|98957891
Strand -
CircType exon
Host Gene ENSG00000140443.12;
Algorism CIRI2;
Sequence CAGTCTCCTCACTCTGTCCCTGTCCTTCCCTGTTCTCCCTTTCTCTCTCCTCTCTGCTTCATAACGGAAAAATAATTGCCACAAGTCCAGCTGGGAAGCCCTTTTTATCAGTTTGAGGAAGTGGCTGTCCCTGTGGCCCCATCCAACCACTGTACACACCCGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr15:98957729|98957891 hsa-miR-185-5p 0 0 1
chr15:98957729|98957891 hsa-miR-185-3p 0 0 1
chr15:98957729|98957891 hsa-miR-422a 0 1 1
chr15:98957729|98957891 hsa-miR-944 0 0 1
chr15:98957729|98957891 hsa-miR-140-5p 0 0 1
chr15:98957729|98957891 hsa-miR-1207-3p 0 0 1
chr15:98957729|98957891 hsa-miR-371-5p 0 0 1
chr15:98957729|98957891 hsa-miR-220c 0 0 1
chr15:98957729|98957891 hsa-miR-378 0 0 1
chr15:98957729|98957891 hsa-miR-886-3p 0 0 1
chr15:98957729|98957891 hsa-miR-762 1 0 0
chr15:98957729|98957891 hsa-miR-765 1 1 0
chr15:98957729|98957891 hsa-miR-936 1 0 0
chr15:98957729|98957891 hsa-miR-3132 1 0 0
chr15:98957729|98957891 hsa-miR-378b 1 1 0
chr15:98957729|98957891 hsa-miR-3138 1 0 0
chr15:98957729|98957891 hsa-miR-3153 1 0 0
chr15:98957729|98957891 hsa-miR-3154 1 0 0
chr15:98957729|98957891 hsa-miR-3175 1 0 0
chr15:98957729|98957891 hsa-miR-378c 1 1 0
chr15:98957729|98957891 hsa-miR-4298 1 1 0
chr15:98957729|98957891 hsa-miR-4306 0 1 0
chr15:98957729|98957891 hsa-miR-4270 1 0 0
chr15:98957729|98957891 hsa-miR-378e 0 1 0
chr15:98957729|98957891 hsa-miR-378f 0 1 0
chr15:98957729|98957891 hsa-miR-4436a 1 0 0
chr15:98957729|98957891 hsa-miR-4441 1 0 0
chr15:98957729|98957891 hsa-miR-4455 1 0 0
chr15:98957729|98957891 hsa-miR-378h 0 1 0
chr15:98957729|98957891 hsa-miR-4468 1 0 0
chr15:98957729|98957891 hsa-miR-4476 1 1 0
chr15:98957729|98957891 hsa-miR-4533 0 1 0
chr15:98957729|98957891 hsa-miR-4644 1 1 0
chr15:98957729|98957891 hsa-miR-4689 1 0 0
chr15:98957729|98957891 hsa-miR-4706 1 0 0
chr15:98957729|98957891 hsa-miR-4739 1 1 0
chr15:98957729|98957891 hsa-miR-5090 1 0 0
chr15:98957729|98957891 hsa-miR-5739 1 1 0
chr15:98957729|98957891 hsa-miR-6090 1 0 0
chr15:98957729|98957891 hsa-miR-6124 1 0 0
chr15:98957729|98957891 hsa-miR-6127 1 0 0
chr15:98957729|98957891 hsa-miR-6133 1 0 0
chr15:98957729|98957891 hsa-miR-7150 1 0 0
chr15:98957729|98957891 hsa-miR-8060 1 1 0
chr15:98957729|98957891 hsa-miR-8085 1 0 0
chr15:98957729|98957891 hsa-miR-9500 0 1 0
chr15:98957729|98957891 hsa-miR-12118 1 0 0
chr15:98957729|98957891 hsa-miR-127-5p 1 0 0
chr15:98957729|98957891 hsa-miR-211-3p 1 1 0
chr15:98957729|98957891 hsa-miR-6734-5p 1 0 0
chr15:98957729|98957891 hsa-miR-504-3p 1 0 0
chr15:98957729|98957891 hsa-miR-6747-5p 1 0 0
chr15:98957729|98957891 hsa-miR-1287-5p 1 0 0
chr15:98957729|98957891 hsa-miR-7106-5p 1 0 0
chr15:98957729|98957891 hsa-miR-27a-5p 1 0 0
chr15:98957729|98957891 hsa-miR-6799-5p 1 0 0
chr15:98957729|98957891 hsa-miR-6510-5p 1 1 0
chr15:98957729|98957891 hsa-miR-1236-5p 1 0 0
chr15:98957729|98957891 hsa-miR-5187-5p 1 0 0
chr15:98957729|98957891 hsa-miR-1227-5p 0 1 0
chr15:98957729|98957891 hsa-miR-6757-5p 1 0 0
chr15:98957729|98957891 hsa-miR-6873-5p 1 0 0
chr15:98957729|98957891 hsa-miR-7847-3p 1 0 0
chr15:98957729|98957891 hsa-miR-4695-5p 1 0 0
chr15:98957729|98957891 hsa-miR-6867-5p 1 0 0
chr15:98957729|98957891 hsa-miR-6746-5p 1 0 0
chr15:98957729|98957891 hsa-miR-6730-5p 1 0 0
chr15:98957729|98957891 hsa-miR-6721-5p 1 0 0
chr15:98957729|98957891 hsa-miR-4655-5p 1 0 0
chr15:98957729|98957891 hsa-miR-197-5p 1 0 0
chr15:98957729|98957891 hsa-miR-7845-5p 1 1 0
chr15:98957729|98957891 hsa-miR-6716-5p 1 0 0
chr15:98957729|98957891 hsa-miR-6772-5p 1 0 0
chr15:98957729|98957891 hsa-miR-3190-3p 1 0 0
chr15:98957729|98957891 hsa-miR-6798-5p 1 0 0
chr15:98957729|98957891 hsa-miR-3126-5p 1 0 0
chr15:98957729|98957891 hsa-miR-6760-5p 1 1 0
chr15:98957729|98957891 hsa-miR-2467-3p 1 0 0
chr15:98957729|98957891 hsa-miR-6782-5p 1 0 0
chr15:98957729|98957891 hsa-miR-6786-5p 1 0 0
chr15:98957729|98957891 hsa-miR-204-3p 1 0 0
chr15:98957729|98957891 hsa-miR-4640-5p 1 0 0
chr15:98957729|98957891 hsa-miR-4691-3p 0 1 0
chr15:98957729|98957891 hsa-miR-877-5p 1 0 0
chr15:98957729|98957891 hsa-miR-4732-5p 1 0 0
chr15:98957729|98957891 hsa-miR-3202 1 1 0
chr15:98957729|98957891 hsa-miR-6834-5p 1 0 0
chr15:98957729|98957891 hsa-miR-4787-5p 1 0 0
chr15:98957729|98957891 hsa-miR-149-3p 1 1 0
chr15:98957729|98957891 hsa-miR-6824-5p 1 0 0
chr15:98957729|98957891 hsa-miR-7112-5p 1 0 0
chr15:98957729|98957891 hsa-miR-6895-5p 1 0 0
chr15:98957729|98957891 hsa-miR-423-5p 1 0 0
chr15:98957729|98957891 hsa-miR-7846-3p 1 1 0
chr15:98957729|98957891 hsa-miR-3158-3p 0 1 0
chr15:98957729|98957891 hsa-miR-6832-5p 1 1 0
chr15:98957729|98957891 hsa-miR-891a-3p 1 0 0
chr15:98957729|98957891 hsa-miR-483-5p 1 0 0
chr15:98957729|98957891 hsa-miR-5004-5p 1 1 0
chr15:98957729|98957891 hsa-miR-1207-5p 1 0 0
chr15:98957729|98957891 hsa-miR-4763-3p 1 0 0
chr15:98957729|98957891 hsa-miR-6752-5p 1 0 0
chr15:98957729|98957891 hsa-miR-6754-5p 1 0 0
chr15:98957729|98957891 hsa-miR-6756-5p 1 0 0
chr15:98957729|98957891 hsa-miR-6803-5p 1 0 0
chr15:98957729|98957891 hsa-miR-7110-5p 1 0 0
chr15:98957729|98957891 hsa-miR-1249-5p 1 0 0
chr15:98957729|98957891 hsa-miR-6722-3p 1 0 0
chr15:98957729|98957891 hsa-miR-6751-5p 1 0 0
chr15:98957729|98957891 hsa-miR-6779-5p 1 0 0
chr15:98957729|98957891 hsa-miR-6780a-5p 1 0 0
chr15:98957729|98957891 hsa-miR-6797-5p 1 1 0
chr15:98957729|98957891 hsa-miR-6808-5p 1 0 0
chr15:98957729|98957891 hsa-miR-6875-5p 1 0 0
chr15:98957729|98957891 hsa-miR-6879-5p 1 1 0
chr15:98957729|98957891 hsa-miR-4728-5p 1 1 0
chr15:98957729|98957891 hsa-miR-5196-5p 1 1 0
chr15:98957729|98957891 hsa-miR-6780b-5p 1 0 0
chr15:98957729|98957891 hsa-miR-4632-5p 1 0 0
chr15:98957729|98957891 hsa-miR-4725-3p 1 0 0
chr15:98957729|98957891 hsa-miR-4745-5p 1 0 0
chr15:98957729|98957891 hsa-miR-6735-5p 1 0 0
chr15:98957729|98957891 hsa-miR-6794-5p 1 0 0
chr15:98957729|98957891 hsa-miR-4436b-3p 1 0 0
chr15:98957729|98957891 hsa-miR-5586-3p 0 1 0
chr15:98957729|98957891 hsa-miR-6511a-5p 1 0 0
chr15:98957729|98957891 hsa-miR-6731-5p 1 1 0
chr15:98957729|98957891 hsa-miR-6758-5p 1 1 0
chr15:98957729|98957891 hsa-miR-6856-5p 1 1 0
chr15:98957729|98957891 hsa-miR-6736-5p 1 0 0
chr15:98957729|98957891 hsa-miR-6876-5p 0 1 0
chr15:98957729|98957891 hsa-miR-6891-5p 1 0 0
chr15:98957729|98957891 hsa-miR-378a-3p 0 1 0
chr15:98957729|98957891 hsa-miR-4716-3p 1 0 0
chr15:98957729|98957891 hsa-miR-6785-5p 1 0 0
chr15:98957729|98957891 hsa-miR-6790-5p 1 0 0
chr15:98957729|98957891 hsa-miR-6762-5p 1 1 0
chr15:98957729|98957891 hsa-miR-378d 0 1 0
chr15:98957729|98957891 hsa-miR-6733-5p 1 0 0
chr15:98957729|98957891 hsa-miR-371a-5p 0 1 0
chr15:98957729|98957891 hsa-miR-518a-3p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr15:98957729|98957891
ORF Type ORF1
Protein Length 29
Nucleotide Length 87
Protein Sequence MPQVQLGSPFYQFEEVAVPVAPSNHCTHP
Nucleotide Sequence TTGCCACAAGTCCAGCTGGGAAGCCCTTTTTATCAGTTTGAGGAAGTGGCTGTCCCTGTGGCCCCATCCAACCACTGTACACACCCG
CircID chr15:98957729|98957891
ORF Type ORF2
Protein Length 28
Nucleotide Length 87
Protein Sequence MFSLSLSSLLHNGKIIATSPAGKPFLSV
Nucleotide Sequence CTGTTCTCCCTTTCTCTCTCCTCTCTGCTTCATAACGGAAAAATAATTGCCACAAGTCCAGCTGGGAAGCCCTTTTTATCAGTTTGA
CircID chr15:98957729|98957891
ORF Type ORF3
Protein Length 27
Nucleotide Length 84
Protein Sequence MGPQGQPLPQTDKKGFPAGLVAIIFPL
Nucleotide Sequence ATGGGGCCACAGGGACAGCCACTTCCTCAAACTGATAAAAAGGGCTTCCCAGCTGGACTTGTGGCAATTATTTTTCCGTTATGA
CircID chr15:98957729|98957891
ORF Type ORF4
Protein Length 37
Nucleotide Length 111
Protein Sequence MIKRASQLDLWQLFFRYEAERREKGRTGKDRDRVRRL
Nucleotide Sequence CTGATAAAAAGGGCTTCCCAGCTGGACTTGTGGCAATTATTTTTCCGTTATGAAGCAGAGAGGAGAGAGAAAGGGAGAACAGGGAAGGACAGGGACAGAGTGAGGAGACTG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab