CircRNA Information

General Information
circRNA Basic Information
CircID chr15:98960741|98960948
Strand -
CircType exon
Host Gene ENSG00000140443.12;
Algorism CIRI2;
Sequence CTCACAGCCAGTCCCTGATAGAACACACGCAGGAGCAGAGTCCCCTCCCCCTCCAGGCTGCCCTCTCAACTTCTCCCTCACCTCCTTCCCTAGGGGTAGACAGAGATGTACCAAACCTTCCGGCTGGAAAGCCCAGTGGCCGGCGCCGAGGCTCGTGGCGTCACGCCCCCCCCGCCAGGGCTGTACCTCCGTCTCCCTGGTCCTGCTG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr15:98960741|98960948 hsa-miR-214-5p 0 0 1
chr15:98960741|98960948 hsa-miR-214-3p 0 0 1
chr15:98960741|98960948 hsa-miR-892b 0 0 1
chr15:98960741|98960948 hsa-miR-934 0 0 1
chr15:98960741|98960948 hsa-miR-1286 1 1 1
chr15:98960741|98960948 hsa-miR-1263 0 0 1
chr15:98960741|98960948 hsa-miR-1307-5p 0 0 1
chr15:98960741|98960948 hsa-miR-1307-3p 0 0 1
chr15:98960741|98960948 hsa-miR-767-3p 0 0 1
chr15:98960741|98960948 hsa-miR-1268 0 0 1
chr15:98960741|98960948 hsa-miR-1254 0 0 1
chr15:98960741|98960948 hsa-miR-663 0 0 1
chr15:98960741|98960948 hsa-miR-622 1 0 0
chr15:98960741|98960948 hsa-miR-637 1 0 0
chr15:98960741|98960948 hsa-miR-661 1 0 0
chr15:98960741|98960948 hsa-miR-663a 1 1 0
chr15:98960741|98960948 hsa-miR-1321 0 1 0
chr15:98960741|98960948 hsa-miR-1469 1 1 0
chr15:98960741|98960948 hsa-miR-2861 1 0 0
chr15:98960741|98960948 hsa-miR-3141 1 0 0
chr15:98960741|98960948 hsa-miR-3154 1 0 0
chr15:98960741|98960948 hsa-miR-3193 0 1 0
chr15:98960741|98960948 hsa-miR-3195 0 1 0
chr15:98960741|98960948 hsa-miR-3196 1 0 0
chr15:98960741|98960948 hsa-miR-4270 1 1 0
chr15:98960741|98960948 hsa-miR-4271 1 0 0
chr15:98960741|98960948 hsa-miR-3652 1 0 0
chr15:98960741|98960948 hsa-miR-3918 1 0 0
chr15:98960741|98960948 hsa-miR-1268b 0 1 0
chr15:98960741|98960948 hsa-miR-378g 0 1 0
chr15:98960741|98960948 hsa-miR-4488 1 1 0
chr15:98960741|98960948 hsa-miR-4510 0 1 0
chr15:98960741|98960948 hsa-miR-4533 1 1 0
chr15:98960741|98960948 hsa-miR-4656 1 0 0
chr15:98960741|98960948 hsa-miR-4688 1 0 0
chr15:98960741|98960948 hsa-miR-4706 1 0 0
chr15:98960741|98960948 hsa-miR-4710 0 1 0
chr15:98960741|98960948 hsa-miR-4739 1 1 0
chr15:98960741|98960948 hsa-miR-4741 1 0 0
chr15:98960741|98960948 hsa-miR-4748 0 1 0
chr15:98960741|98960948 hsa-miR-5090 1 0 0
chr15:98960741|98960948 hsa-miR-5703 0 1 0
chr15:98960741|98960948 hsa-miR-5787 1 0 0
chr15:98960741|98960948 hsa-miR-6086 1 1 0
chr15:98960741|98960948 hsa-miR-6088 1 0 0
chr15:98960741|98960948 hsa-miR-6127 1 1 0
chr15:98960741|98960948 hsa-miR-6129 0 1 0
chr15:98960741|98960948 hsa-miR-6132 1 0 0
chr15:98960741|98960948 hsa-miR-6133 1 1 0
chr15:98960741|98960948 hsa-miR-8089 1 1 0
chr15:98960741|98960948 hsa-miR-9500 0 1 0
chr15:98960741|98960948 hsa-miR-12118 0 1 0
chr15:98960741|98960948 hsa-miR-12121 1 0 0
chr15:98960741|98960948 hsa-miR-12128 0 1 0
chr15:98960741|98960948 hsa-miR-150-3p 1 1 0
chr15:98960741|98960948 hsa-miR-6734-5p 1 0 0
chr15:98960741|98960948 hsa-miR-6765-5p 1 0 0
chr15:98960741|98960948 hsa-miR-7106-5p 1 0 0
chr15:98960741|98960948 hsa-miR-6825-5p 0 1 0
chr15:98960741|98960948 hsa-miR-6720-5p 1 0 0
chr15:98960741|98960948 hsa-miR-6510-5p 1 1 0
chr15:98960741|98960948 hsa-miR-6728-5p 1 0 0
chr15:98960741|98960948 hsa-miR-139-3p 1 1 0
chr15:98960741|98960948 hsa-miR-7851-3p 0 1 0
chr15:98960741|98960948 hsa-miR-6515-5p 0 1 0
chr15:98960741|98960948 hsa-miR-6089 1 0 0
chr15:98960741|98960948 hsa-miR-6880-5p 1 0 0
chr15:98960741|98960948 hsa-miR-6746-5p 1 1 0
chr15:98960741|98960948 hsa-miR-4653-3p 1 0 0
chr15:98960741|98960948 hsa-miR-7845-5p 1 0 0
chr15:98960741|98960948 hsa-miR-3180-3p 1 0 0
chr15:98960741|98960948 hsa-miR-6732-5p 1 0 0
chr15:98960741|98960948 hsa-miR-656-5p 1 0 0
chr15:98960741|98960948 hsa-miR-6805-5p 1 1 0
chr15:98960741|98960948 hsa-miR-6798-5p 1 0 0
chr15:98960741|98960948 hsa-miR-6760-5p 1 1 0
chr15:98960741|98960948 hsa-miR-6782-5p 1 0 0
chr15:98960741|98960948 hsa-miR-6728-3p 0 1 0
chr15:98960741|98960948 hsa-miR-6786-5p 1 0 0
chr15:98960741|98960948 hsa-miR-6772-3p 0 1 0
chr15:98960741|98960948 hsa-miR-7109-5p 1 1 0
chr15:98960741|98960948 hsa-miR-1226-5p 1 0 0
chr15:98960741|98960948 hsa-miR-4640-5p 1 1 0
chr15:98960741|98960948 hsa-miR-6753-5p 0 1 0
chr15:98960741|98960948 hsa-miR-885-3p 1 0 0
chr15:98960741|98960948 hsa-miR-1908-5p 1 1 0
chr15:98960741|98960948 hsa-miR-652-5p 1 0 0
chr15:98960741|98960948 hsa-miR-1228-5p 1 0 0
chr15:98960741|98960948 hsa-miR-6771-5p 1 0 0
chr15:98960741|98960948 hsa-miR-6749-5p 1 0 0
chr15:98960741|98960948 hsa-miR-4787-5p 1 0 0
chr15:98960741|98960948 hsa-miR-149-3p 1 0 0
chr15:98960741|98960948 hsa-miR-6824-5p 1 0 0
chr15:98960741|98960948 hsa-miR-3162-5p 1 1 0
chr15:98960741|98960948 hsa-miR-4776-5p 1 0 0
chr15:98960741|98960948 hsa-miR-490-3p 1 0 0
chr15:98960741|98960948 hsa-miR-4707-5p 1 0 0
chr15:98960741|98960948 hsa-miR-4652-5p 0 1 0
chr15:98960741|98960948 hsa-miR-7113-5p 0 1 0
chr15:98960741|98960948 hsa-miR-6856-3p 0 1 0
chr15:98960741|98960948 hsa-miR-5195-5p 0 1 0
chr15:98960741|98960948 hsa-miR-4520-5p 0 1 0
chr15:98960741|98960948 hsa-miR-10400-5p 1 0 0
chr15:98960741|98960948 hsa-miR-1207-5p 1 0 0
chr15:98960741|98960948 hsa-miR-4763-3p 1 0 0
chr15:98960741|98960948 hsa-miR-6787-5p 1 1 0
chr15:98960741|98960948 hsa-miR-6812-5p 1 0 0
chr15:98960741|98960948 hsa-miR-6816-5p 1 0 0
chr15:98960741|98960948 hsa-miR-6865-5p 1 0 0
chr15:98960741|98960948 hsa-miR-6743-5p 1 0 0
chr15:98960741|98960948 hsa-miR-6752-5p 1 1 0
chr15:98960741|98960948 hsa-miR-6754-5p 1 1 0
chr15:98960741|98960948 hsa-miR-6756-5p 1 0 0
chr15:98960741|98960948 hsa-miR-6803-5p 1 0 0
chr15:98960741|98960948 hsa-miR-7107-5p 1 1 0
chr15:98960741|98960948 hsa-miR-7110-5p 1 1 0
chr15:98960741|98960948 hsa-miR-1249-5p 1 1 0
chr15:98960741|98960948 hsa-miR-6751-5p 1 0 0
chr15:98960741|98960948 hsa-miR-6779-5p 1 0 0
chr15:98960741|98960948 hsa-miR-6780a-5p 1 0 0
chr15:98960741|98960948 hsa-miR-6797-5p 1 0 0
chr15:98960741|98960948 hsa-miR-6808-5p 1 0 0
chr15:98960741|98960948 hsa-miR-6879-5p 1 1 0
chr15:98960741|98960948 hsa-miR-7111-5p 1 1 0
chr15:98960741|98960948 hsa-miR-4728-5p 1 1 0
chr15:98960741|98960948 hsa-miR-5189-5p 1 0 0
chr15:98960741|98960948 hsa-miR-5196-5p 1 1 0
chr15:98960741|98960948 hsa-miR-6780b-5p 1 0 0
chr15:98960741|98960948 hsa-miR-6836-5p 1 0 0
chr15:98960741|98960948 hsa-miR-10396a-5p 1 0 0
chr15:98960741|98960948 hsa-miR-10396b-5p 1 0 0
chr15:98960741|98960948 hsa-miR-1237-5p 1 1 0
chr15:98960741|98960948 hsa-miR-328-5p 1 0 0
chr15:98960741|98960948 hsa-miR-4632-5p 1 1 0
chr15:98960741|98960948 hsa-miR-4685-5p 1 0 0
chr15:98960741|98960948 hsa-miR-4726-5p 1 0 0
chr15:98960741|98960948 hsa-miR-6729-5p 1 0 0
chr15:98960741|98960948 hsa-miR-6735-5p 1 0 0
chr15:98960741|98960948 hsa-miR-6794-5p 1 1 0
chr15:98960741|98960948 hsa-miR-6795-5p 1 0 0
chr15:98960741|98960948 hsa-miR-6846-5p 1 0 0
chr15:98960741|98960948 hsa-miR-6848-5p 1 0 0
chr15:98960741|98960948 hsa-miR-6858-5p 1 0 0
chr15:98960741|98960948 hsa-miR-6889-5p 0 1 0
chr15:98960741|98960948 hsa-miR-6885-5p 1 1 0
chr15:98960741|98960948 hsa-miR-1238-5p 1 0 0
chr15:98960741|98960948 hsa-miR-4758-5p 1 0 0
chr15:98960741|98960948 hsa-miR-365b-5p 1 0 0
chr15:98960741|98960948 hsa-miR-4665-5p 1 0 0
chr15:98960741|98960948 hsa-miR-3116 1 0 0
chr15:98960741|98960948 hsa-miR-4747-5p 1 1 0
chr15:98960741|98960948 hsa-miR-6891-5p 1 1 0
chr15:98960741|98960948 hsa-miR-4716-3p 0 1 0
chr15:98960741|98960948 hsa-miR-6785-5p 1 0 0
chr15:98960741|98960948 hsa-miR-6791-5p 1 0 0
chr15:98960741|98960948 hsa-miR-3619-5p 0 1 0
chr15:98960741|98960948 hsa-miR-6504-5p 0 1 0
chr15:98960741|98960948 hsa-miR-3059-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr15:98960741|98960948
ORF Type ORF1
Protein Length 34
Nucleotide Length 102
Protein Sequence MYQTFRLESPVAGAEARGVTPPPPGLYLRLPGPA
Nucleotide Sequence ATGTACCAAACCTTCCGGCTGGAAAGCCCAGTGGCCGGCGCCGAGGCTCGTGGCGTCACGCCCCCCCCGCCAGGGCTGTACCTCCGTCTCCCTGGTCCTGCT
CircID chr15:98960741|98960948
ORF Type ORF2
Protein Length 64
Nucleotide Length 192
Protein Sequence MIEHTQEQSPLPLQAALSTSPSPPSLGVDRDVPNLPAGKPSGRRRGSWRHAPPARAVPPSPWSC
Nucleotide Sequence CTGATAGAACACACGCAGGAGCAGAGTCCCCTCCCCCTCCAGGCTGCCCTCTCAACTTCTCCCTCACCTCCTTCCCTAGGGGTAGACAGAGATGTACCAAACCTTCCGGCTGGAAAGCCCAGTGGCCGGCGCCGAGGCTCGTGGCGTCACGCCCCCCCCGCCAGGGCTGTACCTCCGTCTCCCTGGTCCTGC
CircID chr15:98960741|98960948
ORF Type ORF3
Protein Length 44
Nucleotide Length 135
Protein Sequence MGFPAGRFGTSLSTPREGGEGEVERAAWRGRGLCSCVCSIRDWL
Nucleotide Sequence CTGGGCTTTCCAGCCGGAAGGTTTGGTACATCTCTGTCTACCCCTAGGGAAGGAGGTGAGGGAGAAGTTGAGAGGGCAGCCTGGAGGGGGAGGGGACTCTGCTCCTGCGTGTGTTCTATCAGGGACTGGCTGTGA
CircID chr15:98960741|98960948
ORF Type ORF4
Protein Length 38
Nucleotide Length 114
Protein Sequence MVHLCLPLGKEVREKLRGQPGGGGDSAPACVLSGTGCE
Nucleotide Sequence TTGGTACATCTCTGTCTACCCCTAGGGAAGGAGGTGAGGGAGAAGTTGAGAGGGCAGCCTGGAGGGGGAGGGGACTCTGCTCCTGCGTGTGTTCTATCAGGGACTGGCTGTGAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab