CircRNA Information

General Information
circRNA Basic Information
CircID chr16:10530494|10530799
Strand -
CircType exon
Host Gene ENSG00000213853.8;
Algorism CIRI2;
Sequence ACCCCATCCCAGGACAGCCCCCAGCATCCTGCTCCAACATAAGCAGAAAAAGACAATGAGGTGCAAAGAGCTTATCTCCTGGGATGGTTCCTGGGTGGTCTGCATTGCCACACAGCATCATGCTTTGATCCTGAAGGACAAGGCCCCAAAAGCCCTATTTCTCAGCACAGTCTTAAAATCACCTGGAAATCATTCACCCAGACCCTCTGAATCAGCCTGTCCCAAGCAGCACGGGAACCCCTAAAGCTTGAAAACTCCAGCTCTATGGGACCCTCTCACCGCATTTACTGTCGGGACCATGGGCCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr16:10530494|10530799 hsa-miR-208a-5p 0 0 1
chr16:10530494|10530799 hsa-miR-208a-3p 0 0 1
chr16:10530494|10530799 hsa-miR-205-5p 0 0 1
chr16:10530494|10530799 hsa-miR-205-3p 0 0 1
chr16:10530494|10530799 hsa-miR-511-5p 0 0 1
chr16:10530494|10530799 hsa-miR-511-3p 0 0 1
chr16:10530494|10530799 hsa-miR-498-5p 0 0 1
chr16:10530494|10530799 hsa-miR-498-3p 0 0 1
chr16:10530494|10530799 hsa-miR-507 0 1 1
chr16:10530494|10530799 hsa-miR-539-5p 0 0 1
chr16:10530494|10530799 hsa-miR-539-3p 0 0 1
chr16:10530494|10530799 hsa-miR-557 0 0 1
chr16:10530494|10530799 hsa-miR-637 0 1 1
chr16:10530494|10530799 hsa-miR-665 0 0 1
chr16:10530494|10530799 hsa-miR-873-5p 0 0 1
chr16:10530494|10530799 hsa-miR-873-3p 0 0 1
chr16:10530494|10530799 hsa-miR-208b-5p 0 0 1
chr16:10530494|10530799 hsa-miR-208b-3p 0 0 1
chr16:10530494|10530799 hsa-miR-1182 0 1 1
chr16:10530494|10530799 hsa-miR-1305 0 0 1
chr16:10530494|10530799 hsa-miR-1257 0 0 1
chr16:10530494|10530799 hsa-miR-1262 0 1 1
chr16:10530494|10530799 hsa-miR-1322 0 0 1
chr16:10530494|10530799 hsa-miR-125a-3p 1 0 1
chr16:10530494|10530799 hsa-miR-330-3p 0 0 1
chr16:10530494|10530799 hsa-miR-1302 0 0 1
chr16:10530494|10530799 hsa-miR-644 0 0 1
chr16:10530494|10530799 hsa-miR-544 0 0 1
chr16:10530494|10530799 hsa-miR-147 0 0 1
chr16:10530494|10530799 hsa-miR-499-5p 0 0 1
chr16:10530494|10530799 hsa-miR-147a 0 1 0
chr16:10530494|10530799 hsa-miR-762 1 0 0
chr16:10530494|10530799 hsa-miR-1303 1 0 0
chr16:10530494|10530799 hsa-miR-3122 0 1 0
chr16:10530494|10530799 hsa-miR-3169 1 1 0
chr16:10530494|10530799 hsa-miR-4298 1 1 0
chr16:10530494|10530799 hsa-miR-4251 0 1 0
chr16:10530494|10530799 hsa-miR-4281 1 0 0
chr16:10530494|10530799 hsa-miR-4463 1 0 0
chr16:10530494|10530799 hsa-miR-4478 1 1 0
chr16:10530494|10530799 hsa-miR-4494 1 0 0
chr16:10530494|10530799 hsa-miR-4498 1 0 0
chr16:10530494|10530799 hsa-miR-4505 1 0 0
chr16:10530494|10530799 hsa-miR-4647 1 0 0
chr16:10530494|10530799 hsa-miR-4656 1 0 0
chr16:10530494|10530799 hsa-miR-4688 1 0 0
chr16:10530494|10530799 hsa-miR-4710 1 0 0
chr16:10530494|10530799 hsa-miR-4741 0 1 0
chr16:10530494|10530799 hsa-miR-5090 1 0 0
chr16:10530494|10530799 hsa-miR-5192 1 0 0
chr16:10530494|10530799 hsa-miR-6165 0 1 0
chr16:10530494|10530799 hsa-miR-8075 1 0 0
chr16:10530494|10530799 hsa-miR-8077 1 0 0
chr16:10530494|10530799 hsa-miR-8089 1 0 0
chr16:10530494|10530799 hsa-miR-4731-5p 0 1 0
chr16:10530494|10530799 hsa-miR-500b-3p 0 1 0
chr16:10530494|10530799 hsa-miR-6861-5p 1 0 0
chr16:10530494|10530799 hsa-miR-7160-5p 1 0 0
chr16:10530494|10530799 hsa-miR-6727-5p 1 0 0
chr16:10530494|10530799 hsa-miR-23b-5p 1 1 0
chr16:10530494|10530799 hsa-miR-7845-5p 1 0 0
chr16:10530494|10530799 hsa-miR-6793-5p 1 0 0
chr16:10530494|10530799 hsa-miR-23a-5p 1 1 0
chr16:10530494|10530799 hsa-miR-6798-5p 1 0 0
chr16:10530494|10530799 hsa-miR-6782-5p 1 0 0
chr16:10530494|10530799 hsa-miR-6874-5p 1 0 0
chr16:10530494|10530799 hsa-miR-615-5p 1 0 0
chr16:10530494|10530799 hsa-miR-3944-3p 1 0 0
chr16:10530494|10530799 hsa-miR-149-3p 1 0 0
chr16:10530494|10530799 hsa-miR-202-3p 1 0 0
chr16:10530494|10530799 hsa-miR-6789-5p 1 0 0
chr16:10530494|10530799 hsa-miR-1250-5p 1 0 0
chr16:10530494|10530799 hsa-miR-6812-5p 1 0 0
chr16:10530494|10530799 hsa-miR-6726-5p 1 0 0
chr16:10530494|10530799 hsa-miR-6752-5p 1 0 0
chr16:10530494|10530799 hsa-miR-6803-5p 1 0 0
chr16:10530494|10530799 hsa-miR-6813-5p 1 0 0
chr16:10530494|10530799 hsa-miR-7110-5p 1 0 0
chr16:10530494|10530799 hsa-miR-6751-5p 1 0 0
chr16:10530494|10530799 hsa-miR-6779-5p 1 0 0
chr16:10530494|10530799 hsa-miR-6780a-5p 1 0 0
chr16:10530494|10530799 hsa-miR-3620-5p 0 1 0
chr16:10530494|10530799 hsa-miR-5196-5p 1 0 0
chr16:10530494|10530799 hsa-miR-4725-3p 1 0 0
chr16:10530494|10530799 hsa-miR-6794-5p 1 0 0
chr16:10530494|10530799 hsa-miR-6846-5p 1 1 0
chr16:10530494|10530799 hsa-miR-6848-5p 1 1 0
chr16:10530494|10530799 hsa-miR-6883-5p 1 0 0
chr16:10530494|10530799 hsa-miR-4758-5p 1 0 0
chr16:10530494|10530799 hsa-miR-365a-5p 1 0 0
chr16:10530494|10530799 hsa-miR-5008-3p 1 0 0
chr16:10530494|10530799 hsa-miR-4646-5p 1 0 0
chr16:10530494|10530799 hsa-miR-6724-5p 1 0 0
chr16:10530494|10530799 hsa-miR-6762-5p 1 0 0
chr16:10530494|10530799 hsa-miR-5009-5p 0 1 0
chr16:10530494|10530799 hsa-miR-3914 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr16:10530494|10530799
ORF Type ORF1
Protein Length 43
Nucleotide Length 132
Protein Sequence MGWFLGGLHCHTASCFDPEGQGPKSPISQHSLKITWKSFTQTL
Nucleotide Sequence CTGGGATGGTTCCTGGGTGGTCTGCATTGCCACACAGCATCATGCTTTGATCCTGAAGGACAAGGCCCCAAAAGCCCTATTTCTCAGCACAGTCTTAAAATCACCTGGAAATCATTCACCCAGACCCTCTGA
CircID chr16:10530494|10530799
ORF Type ORF2
Protein Length 30
Nucleotide Length 90
Protein Sequence MSQAAREPLKLENSSSMGPSHRIYCRDHGP
Nucleotide Sequence CTGTCCCAAGCAGCACGGGAACCCCTAAAGCTTGAAAACTCCAGCTCTATGGGACCCTCTCACCGCATTTACTGTCGGGACCATGGGCCC
CircID chr16:10530494|10530799
ORF Type ORF3
Protein Length 71
Nucleotide Length 216
Protein Sequence MLQHKQKKTMRCKELISWDGSWVVCIATQHHALILKDKAPKALFLSTVLKSPGNHSPRPSESACPKQHGNP
Nucleotide Sequence CTGCTCCAACATAAGCAGAAAAAGACAATGAGGTGCAAAGAGCTTATCTCCTGGGATGGTTCCTGGGTGGTCTGCATTGCCACACAGCATCATGCTTTGATCCTGAAGGACAAGGCCCCAAAAGCCCTATTTCTCAGCACAGTCTTAAAATCACCTGGAAATCATTCACCCAGACCCTCTGAATCAGCCTGTCCCAAGCAGCACGGGAACCCCTAA
CircID chr16:10530494|10530799
ORF Type ORF4
Protein Length 35
Nucleotide Length 105
Protein Sequence MQTTQEPSQEISSLHLIVFFCLCWSRMLGAVLGWG
Nucleotide Sequence ATGCAGACCACCCAGGAACCATCCCAGGAGATAAGCTCTTTGCACCTCATTGTCTTTTTCTGCTTATGTTGGAGCAGGATGCTGGGGGCTGTCCTGGGATGGGGT
CircID chr16:10530494|10530799
ORF Type ORF5
Protein Length 32
Nucleotide Length 99
Protein Sequence MEFSSFRGSRAAWDRLIQRVWVNDFQVILRLC
Nucleotide Sequence CTGGAGTTTTCAAGCTTTAGGGGTTCCCGTGCTGCTTGGGACAGGCTGATTCAGAGGGTCTGGGTGAATGATTTCCAGGTGATTTTAAGACTGTGCTGA
CircID chr16:10530494|10530799
ORF Type ORF6
Protein Length 25
Nucleotide Length 78
Protein Sequence MGPCPSGSKHDAVWQCRPPRNHPRR
Nucleotide Sequence TTGGGGCCTTGTCCTTCAGGATCAAAGCATGATGCTGTGTGGCAATGCAGACCACCCAGGAACCATCCCAGGAGATAA
CircID chr16:10530494|10530799
ORF Type ORF7
Protein Length 40
Nucleotide Length 120
Protein Sequence MMLCGNADHPGTIPGDKLFAPHCLFLLMLEQDAGGCPGMG
Nucleotide Sequence ATGATGCTGTGTGGCAATGCAGACCACCCAGGAACCATCCCAGGAGATAAGCTCTTTGCACCTCATTGTCTTTTTCTGCTTATGTTGGAGCAGGATGCTGGGGGCTGTCCTGGGATGGGG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab