CircRNA Information

General Information
circRNA Basic Information
CircID chr16:11846501|11846843
Strand -
CircType exon
Host Gene ENSG00000171490.12;
Algorism find_circ;CIRI2;DCC;
Sequence ATTATCTCCCTCCAAACTCTAAAGAAGGAATATAAATCCTATGAAGCCAAGCTCCGCCTTCTGAGCAGTTTTGATTTCTTCCTTACTGATGCCAGAATTAGGCGGCTCTTACCCTCACTCATTGGGAGACATTTCTATCAAAGAAAGAAGTAAGTTTCTTAGTAATGACTGGACTTTAGCAGCATGAAGCTTCTAGGTGTGTATGCATTGTGTTCTGAATGCCTGTGTGTTTATTTTGTAGAGTTCCAGTATCTGTAAACCTTCTGTCCAAGAATTTATCAAGAGAGATCAATGACTGTATAGGTGGAACAGTCTTAAACATTTCTAAAAGTGGTTCTTGCAG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr16:11846501|11846843 hsa-miR-30a-5p 0 0 1
chr16:11846501|11846843 hsa-miR-30a-3p 0 0 1
chr16:11846501|11846843 hsa-miR-30d-5p 0 0 1
chr16:11846501|11846843 hsa-miR-30d-3p 0 0 1
chr16:11846501|11846843 hsa-miR-212-5p 0 0 1
chr16:11846501|11846843 hsa-miR-212-3p 0 0 1
chr16:11846501|11846843 hsa-miR-30b-5p 0 0 1
chr16:11846501|11846843 hsa-miR-30b-3p 0 0 1
chr16:11846501|11846843 hsa-miR-132-5p 0 0 1
chr16:11846501|11846843 hsa-miR-132-3p 0 0 1
chr16:11846501|11846843 hsa-miR-186-5p 0 0 1
chr16:11846501|11846843 hsa-miR-186-3p 0 0 1
chr16:11846501|11846843 hsa-miR-30e-5p 0 0 1
chr16:11846501|11846843 hsa-miR-30e-3p 0 0 1
chr16:11846501|11846843 hsa-miR-335-5p 0 0 1
chr16:11846501|11846843 hsa-miR-335-3p 0 0 1
chr16:11846501|11846843 hsa-miR-605-5p 0 0 1
chr16:11846501|11846843 hsa-miR-605-3p 0 0 1
chr16:11846501|11846843 hsa-miR-618 0 0 1
chr16:11846501|11846843 hsa-miR-943 0 0 1
chr16:11846501|11846843 hsa-miR-1237-5p 0 0 1
chr16:11846501|11846843 hsa-miR-1237-3p 0 0 1
chr16:11846501|11846843 hsa-miR-548n 0 0 1
chr16:11846501|11846843 hsa-miR-1252-5p 0 0 1
chr16:11846501|11846843 hsa-miR-1252-3p 0 0 1
chr16:11846501|11846843 hsa-miR-140-5p 0 0 1
chr16:11846501|11846843 hsa-miR-145-5p 0 0 1
chr16:11846501|11846843 hsa-miR-770-5p 0 0 1
chr16:11846501|11846843 hsa-miR-576-5p 0 0 1
chr16:11846501|11846843 hsa-miR-30c 0 0 1
chr16:11846501|11846843 hsa-miR-4469 0 1 0
chr16:11846501|11846843 hsa-miR-5190 0 1 0
chr16:11846501|11846843 hsa-miR-6875-3p 0 1 0
chr16:11846501|11846843 hsa-miR-4786-3p 0 1 0
chr16:11846501|11846843 hsa-miR-6802-5p 0 1 0
chr16:11846501|11846843 hsa-miR-7843-3p 0 1 0
chr16:11846501|11846843 hsa-miR-6867-3p 0 1 0
chr16:11846501|11846843 hsa-miR-6741-3p 0 1 0
chr16:11846501|11846843 hsa-miR-199b-5p 0 1 0
chr16:11846501|11846843 hsa-miR-6529-5p 0 1 0
chr16:11846501|11846843 hsa-miR-3928-5p 1 0 0
chr16:11846501|11846843 hsa-miR-4315 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr16:11846501|11846843
ORF Type ORF1
Protein Length 49
Nucleotide Length 147
Protein Sequence MFKTVPPIQSLISLDKFLDRRFTDTGTLQNKHTGIQNTMHTHLEASCC*
Nucleotide Sequence ATGTTTAAGACTGTTCCACCTATACAGTCATTGATCTCTCTTGATAAATTCTTGGACAGAAGGTTTACAGATACTGGAACTCTACAAAATAAACACACAGGCATTCAGAACACAATGCATACACACCTAGAAGCTTCATGCTGCTAA
CircID chr16:11846501|11846843
ORF Type ORF2
Protein Length 41
Nucleotide Length 123
Protein Sequence MPVCLFCRVPVSVNLLSKNLSREINDCIGGTVLNISKSGSC
Nucleotide Sequence ATGCCTGTGTGTTTATTTTGTAGAGTTCCAGTATCTGTAAACCTTCTGTCCAAGAATTTATCAAGAGAGATCAATGACTGTATAGGTGGAACAGTCTTAAACATTTCTAAAAGTGGTTCTTGC
CircID chr16:11846501|11846843
ORF Type ORF3
Protein Length 33
Nucleotide Length 99
Protein Sequence MPELGGSYPHSLGDISIKERSKFLSNDWTLAA*
Nucleotide Sequence ATGCCAGAATTAGGCGGCTCTTACCCTCACTCATTGGGAGACATTTCTATCAAAGAAAGAAGTAAGTTTCTTAGTAATGACTGGACTTTAGCAGCATGA
CircID chr16:11846501|11846843
ORF Type ORF4
Protein Length 51
Nucleotide Length 153
Protein Sequence IISLQTLKKEYKSYEAKLRLLSSFDFFLTDARIRRLLPSLIGRHFYQRKK*
Nucleotide Sequence ATTATCTCCCTCCAAACTCTAAAGAAGGAATATAAATCCTATGAAGCCAAGCTCCGCCTTCTGAGCAGTTTTGATTTCTTCCTTACTGATGCCAGAATTAGGCGGCTCTTACCCTCACTCATTGGGAGACATTTCTATCAAAGAAAGAAGTAA
CircID chr16:11846501|11846843
ORF Type ORF1
Protein Length 37
Nucleotide Length 114
Protein Sequence LQEPLLEMFKTVPPIQSLISLDKFLDRRFTDTGTFFL
Nucleotide Sequence CTGCAAGAACCACTTTTAGAAATGTTTAAGACTGTTCCACCTATACAGTCATTGATCTCTCTTGATAAATTCTTGGACAGAAGGTTTACAGATACTGGAACTTTCTTTCTTTGA
CircID chr16:11846501|11846843
ORF Type ORF2
Protein Length 27
Nucleotide Length 84
Protein Sequence MSEGKSRLILASVRKKSKLLRRRSLAS
Nucleotide Sequence ATGAGTGAGGGTAAGAGCCGCCTAATTCTGGCATCAGTAAGGAAGAAATCAAAACTGCTCAGAAGGCGGAGCTTGGCTTCATAG
CircID chr16:11846501|11846843
ORF Type ORF3
Protein Length 63
Nucleotide Length 189
Protein Sequence MSSFDFFLTDARIRRLLPSLIGRHFYQRKKVPVSVNLLSKNLSREINDCIGGTVLNISKSGSC
Nucleotide Sequence CTGAGCAGTTTTGATTTCTTCCTTACTGATGCCAGAATTAGGCGGCTCTTACCCTCACTCATTGGGAGACATTTCTATCAAAGAAAGAAAGTTCCAGTATCTGTAAACCTTCTGTCCAAGAATTTATCAAGAGAGATCAATGACTGTATAGGTGGAACAGTCTTAAACATTTCTAAAAGTGGTTCTTGC
CircID chr16:11846501|11846843
ORF Type ORF4
Protein Length 31
Nucleotide Length 96
Protein Sequence MISSLLMPELGGSYPHSLGDISIKERKFQYL
Nucleotide Sequence TTGATTTCTTCCTTACTGATGCCAGAATTAGGCGGCTCTTACCCTCACTCATTGGGAGACATTTCTATCAAAGAAAGAAAGTTCCAGTATCTGTAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
chr16:11846501|11846843 U2AF2 20 0 8
chr16:11846501|11846843 MOV10 8 0 2
chr16:11846501|11846843 ELAVL1 7 2 3
chr16:11846501|11846843 SF3B4 2 0 2
chr16:11846501|11846843 FAM120A 3 2 5
chr16:11846501|11846843 KHDRBS1 2 2 2
chr16:11846501|11846843 PRPF8 9 4 2
chr16:11846501|11846843 SLBP 1 0 0
chr16:11846501|11846843 UPF1 5 1 2
chr16:11846501|11846843 SRSF10 1 0 1
chr16:11846501|11846843 TNRC6A 2 1 2
chr16:11846501|11846843 CAPRIN1 0 0 1
chr16:11846501|11846843 FMR1 6 2 4
chr16:11846501|11846843 CPSF6 3 0 0
chr16:11846501|11846843 TIA1 1 1 0
chr16:11846501|11846843 TROVE2 1 3 0
chr16:11846501|11846843 GNL3 1 2 2
chr16:11846501|11846843 DGCR8 3 0 3
chr16:11846501|11846843 SRSF7 3 0 0
chr16:11846501|11846843 SRSF1 2 1 0
chr16:11846501|11846843 NOP58 3 3 5
chr16:11846501|11846843 SRSF3 1 0 0
chr16:11846501|11846843 U2AF1 7 0 2
chr16:11846501|11846843 NOP56 0 1 1
chr16:11846501|11846843 SRSF9 0 0 1
chr16:11846501|11846843 HNRNPU 2 2 2
chr16:11846501|11846843 DDX54 5 1 6
chr16:11846501|11846843 LSM11 2 1 0
chr16:11846501|11846843 SBDS 0 1 0
chr16:11846501|11846843 HNRNPK 0 0 1
chr16:11846501|11846843 PCBP2 2 0 1
chr16:11846501|11846843 HNRNPUL1 3 2 0
chr16:11846501|11846843 HNRNPM 0 1 0
chr16:11846501|11846843 SF3A3 2 0 1
chr16:11846501|11846843 PTBP1 3 1 1
chr16:11846501|11846843 HNRNPC 9 0 0
chr16:11846501|11846843 YWHAG 1 1 0
chr16:11846501|11846843 KHSRP 0 1 0
chr16:11846501|11846843 NONO 2 0 0
chr16:11846501|11846843 ZNF184 2 0 0
chr16:11846501|11846843 ACIN1 2 0 2
chr16:11846501|11846843 DDX3X 2 2 2
chr16:11846501|11846843 ZC3H7B 0 0 1
chr16:11846501|11846843 LARP4B 0 0 1
chr16:11846501|11846843 SMNDC1 5 2 2
chr16:11846501|11846843 RBM10 4 0 0
chr16:11846501|11846843 HNRNPA1 3 1 1
chr16:11846501|11846843 LIN28B 4 4 5
chr16:11846501|11846843 LIN28A 0 0 1
chr16:11846501|11846843 FTO 0 1 0
chr16:11846501|11846843 FXR1 5 1 4
chr16:11846501|11846843 FXR2 4 1 2
chr16:11846501|11846843 SND1 5 2 6
chr16:11846501|11846843 IGF2BP1 6 2 10
chr16:11846501|11846843 GTF2F1 2 1 2
chr16:11846501|11846843 IGF2BP3 2 2 4
chr16:11846501|11846843 IGF2BP2 6 2 12
chr16:11846501|11846843 NPM1 2 1 0
chr16:11846501|11846843 BUD13 4 0 3
chr16:11846501|11846843 TARDBP 1 0 1
chr16:11846501|11846843 TAF15 5 2 2
chr16:11846501|11846843 DICER1 0 0 1
chr16:11846501|11846843 RBFOX2 2 0 0
chr16:11846501|11846843 RBM47 2 0 3
chr16:11846501|11846843 SLTM 3 3 0
chr16:11846501|11846843 EIF4G2 3 0 1
chr16:11846501|11846843 DDX42 0 1 1
chr16:11846501|11846843 CSTF2T 4 1 2
chr16:11846501|11846843 SAFB2 2 2 1
chr16:11846501|11846843 RBM27 0 1 2
chr16:11846501|11846843 RBM22 3 2 0
chr16:11846501|11846843 ILF3 0 1 0
chr16:11846501|11846843 XRN2 1 0 0
chr16:11846501|11846843 TRA2A 4 0 0
chr16:11846501|11846843 AGO2 4 2 6
chr16:11846501|11846843 AGO1 0 0 2
chr16:11846501|11846843 EIF4A3 3 2 4
chr16:11846501|11846843 FBL 1 2 5
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab